hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-17551066/chunk_1/iprscan-20080813-17551066.nocrc
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Query sequence: sh04761
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  83.7    2.2e-20   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     380   404 ..     1    23 []    25.8   0.0058
SM00355      2/3     410   434 ..     1    23 []    30.2  0.00029
SM00355      3/3     440   462 ..     1    23 []    27.7   0.0016

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 380 to 404: score 25.8, E = 0.0058
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y+C+++gC k++   ++Lk H+r+H   
     sh04761   380    YVCSFpGCRKTYFKSsHLKAHLRTH    404  

SM00355: domain 2 of 3, from 410 to 434: score 30.2, E = 0.00029
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+++gC+k+f + ++L rH r+H   
     sh04761   410    FNCSWdGCDKKFARSdELSRHRRTH    434  

SM00355: domain 3 of 3, from 440 to 462: score 27.7, E = 0.0016
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C+++f + ++L++H r+H   
     sh04761   440    FVCPV-CDRRFMRSdHLTKHARRH    462  

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