hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18013375/chunk_1/iprscan-20080813-18013375.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: sh04870
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00656.12.fs Caspase domain                             84.1      4e-26   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00656.12.fs   1/1      15   137 ..   157   257 .]    84.1    4e-26

Alignments of top-scoring domains:
PF00656.12.fs: domain 1 of 1, from 15 to 137: score 84.1, E = 4e-26
                   *->gelddgvkvd....................aglskipaeadflvays
                      +e d+gv++++++++ ++++ ++++ ++++ ++ ++p+++d++++y+
     sh04870    15    DETDRGVDQQdgknhagspgceesdagkekLPKMRLPTRSDMICGYA 61   

                   ttpgyvSwrntgagSwFiqaLcqvleeygkkpktaygldlldiltrVnrk
                   +  g+ ++rnt++gSw+i aL qv+      +++a++++++d+l++Vn  
     sh04870    62 CLKGTAAMRNTKRGSWYIEALAQVF------SERACDMHVADMLVKVNAL 105  

                   Vaka.........tgkkQmPclssstltkklyf<-*
                   ++++++  ++++ +++k m ++ +stl + ly+   
     sh04870   106 IKDRegyapgtefHRCKEMSEY-CSTLCRHLYL    137  

//