hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18013375/chunk_1/iprscan-20080813-18013375.nocrc
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Query sequence: sh04870
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00115                                                  -0.0    3.6e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00115     1/1       1   139 [.     1   282 []    -0.0  3.6e-08

Alignments of top-scoring domains:
SM00115: domain 1 of 1, from 1 to 139: score -0.0, E = 3.6e-08
                   *->iYrmnskprRtGlALIINNenFdsesgLkrRnGTdvDaenLtelFes
                            ++              +s                       
     sh04870     1    ------EEV-------------TS----------------------- 5    

                   LGYeVkvknnLtaeeMleelkefAelpeHsdsDSfvlVlLSHGeeggiyG
                                   l++l +f +                         
     sh04870     6 ----------------LSILSAFVT------------------------- 14   

                   tDgsekkpvhdplkideIfslFngdnCpsLagKPKlFfIQACRGdeldgg
                    D                                           e+d+g
     sh04870    15 -D-------------------------------------------ETDRG 20   

                   vpvedsvaeqpspksvesddargtetdsgtseeleddavydkipveADFl
                   v+++d++++++sp+ +es             +++++  +++++p+++D++
     sh04870    21 VDQQDGKNHAGSPGCEES-------------DAGKEKLPKMRLPTRSDMI 57   

                   aaySTtPgyvSwRnptrGSWFIqsLcevlkeyaksldlldiLteVnqkVa
                   ++y++ +g++++Rn++rGSW+I++L +v++e+a++++++d+L++Vn  ++
     sh04870    58 CGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIK 107  

                   vkfesnqpddptsnakkQmPtitsmTLtKkLyffp<-*
                   +++++   +++t++++++ +  +++TL+++Ly+fp   
     sh04870   108 DREGY---APGTEFHRCKEMSEYCSTLCRHLYLFP    139  

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