# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osh04870.fasta.nr -Q sh04870.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sh04870, 144 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842257 sequences Expectation_n fit: rho(ln(x))= 4.4787+/-0.000178; mu= 9.0115+/- 0.010 mean_var=56.3999+/-11.028, 0's: 41 Z-trim: 46 B-trim: 9 in 1/65 Lambda= 0.170779 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088860|dbj|BAD92877.1| caspase 2 isoform 2 pr ( 144) 996 252.9 1.1e-65 gi|194381956|dbj|BAG64347.1| unnamed protein produ ( 202) 921 234.5 5.1e-60 gi|109069351|ref|XP_001087704.1| PREDICTED: simila ( 280) 921 234.6 6.5e-60 gi|119572246|gb|EAW51861.1| hCG20684, isoform CRA_ ( 296) 921 234.6 6.8e-60 gi|194382554|dbj|BAG64447.1| unnamed protein produ ( 336) 921 234.7 7.5e-60 gi|114616495|ref|XP_001162299.1| PREDICTED: caspas ( 365) 921 234.7 8e-60 gi|114616497|ref|XP_001162379.1| PREDICTED: caspas ( 421) 921 234.8 8.9e-60 gi|30583319|gb|AAP35904.1| caspase 2, apoptosis-re ( 435) 921 234.8 9.2e-60 gi|537292|gb|AAA58959.1| ICH-1L gi|27978962|gb ( 435) 921 234.8 9.2e-60 gi|30585251|gb|AAP36898.1| Homo sapiens caspase 2, ( 436) 921 234.8 9.2e-60 gi|114616491|ref|XP_001162422.1| PREDICTED: caspas ( 439) 921 234.8 9.2e-60 gi|37589083|gb|AAH02427.2| Caspase 2, apoptosis-re ( 452) 921 234.8 9.4e-60 gi|83300977|sp|P42575.2|CASP2_HUMAN Caspase-2 prec ( 452) 921 234.8 9.4e-60 gi|149706575|ref|XP_001495710.1| PREDICTED: simila ( 452) 870 222.2 5.7e-56 gi|170963371|gb|ACB41091.1| caspase-2 [Cricetulus ( 452) 860 219.7 3.2e-55 gi|83301061|sp|P55215|CASP2_RAT Caspase-2 precurso ( 452) 854 218.3 8.8e-55 gi|74217862|dbj|BAE41936.1| unnamed protein produc ( 368) 849 217.0 1.8e-54 gi|26334905|dbj|BAC31153.1| unnamed protein produc ( 452) 849 217.0 2.1e-54 gi|83301030|sp|P29594.5|CASP2_MOUSE Caspase-2 prec ( 452) 849 217.0 2.1e-54 gi|194666503|ref|XP_869122.2| PREDICTED: caspase 2 ( 452) 839 214.6 1.1e-53 gi|73978459|ref|XP_848601.1| PREDICTED: similar to ( 452) 837 214.1 1.6e-53 gi|126340973|ref|XP_001366069.1| PREDICTED: simila ( 453) 819 209.6 3.5e-52 gi|149638120|ref|XP_001506482.1| PREDICTED: simila ( 767) 788 202.2 1e-49 gi|34810359|pdb|1PYO|B Chain B, Crystal Structure ( 105) 739 189.4 9.7e-47 gi|149242814|pdb|2P2C|B Chain B, Inhibition Of Cas ( 106) 739 189.4 9.8e-47 gi|2493525|sp|Q98943|CASP2_CHICK Caspase-2 precurs ( 424) 731 187.9 1.1e-45 gi|1490878|gb|AAC29881.1| cysteine protease caspas ( 428) 731 187.9 1.1e-45 gi|118083361|ref|XP_416524.2| PREDICTED: similar t ( 424) 728 187.2 1.9e-45 gi|7619900|dbj|BAA94746.1| caspase-2 [Xenopus laev ( 423) 698 179.8 3.1e-43 gi|110811216|gb|ABG91569.1| caspase 2 [Danio rerio ( 435) 460 121.2 1.4e-25 gi|1004369|gb|AAC52260.1| interleukin-1-beta-conve ( 182) 314 84.9 4.9e-15 gi|19743694|gb|AAL92526.1| caspase 2 [Macaca mulat ( 34) 263 71.8 8.3e-12 gi|29179403|gb|AAH49286.1| MGC53258 protein [Xenop ( 415) 272 74.8 1.2e-11 gi|27924349|gb|AAH45046.1| MGC53258 protein [Xenop ( 419) 272 74.8 1.2e-11 gi|148921553|gb|AAI46718.1| Casp2 protein [Danio r ( 399) 257 71.1 1.5e-10 gi|122936396|gb|AAI30127.1| LOC100037079 protein [ ( 319) 229 64.2 1.5e-08 gi|62858775|ref|NP_001016299.1| caspase 7, apoptos ( 317) 223 62.7 4.2e-08 gi|89266896|emb|CAJ82745.1| caspase 7, apoptosis-r ( 318) 223 62.7 4.2e-08 gi|169643278|emb|CAQ16393.1| caspase-3 protein [Hy ( 125) 217 60.9 5.8e-08 gi|47221591|emb|CAF97856.1| unnamed protein produc ( 397) 215 60.8 2e-07 gi|24078495|gb|AAN45849.1|AF412335_1 amphiCASP-3/7 ( 328) 214 60.5 2e-07 gi|156220971|gb|EDO41832.1| predicted protein [Nem ( 392) 214 60.5 2.3e-07 gi|1168879|sp|P45436|CED3_CAEVU Cell death protein ( 496) 212 60.1 3.9e-07 gi|194205658|ref|XP_001498172.2| PREDICTED: simila ( 302) 208 59.0 5.3e-07 gi|63054884|gb|AAY28975.1| caspase 7 [Salmo salar] ( 245) 205 58.2 7.5e-07 gi|47219681|emb|CAG12603.1| unnamed protein produc ( 242) 204 57.9 8.8e-07 gi|17942682|pdb|1K86|A Chain A, Crystal Structure ( 253) 203 57.7 1.1e-06 gi|17942680|pdb|1K88|A Chain A, Crystal Structure ( 253) 203 57.7 1.1e-06 gi|52695493|pdb|1SHJ|A Chain A, Caspase-7 In Compl ( 262) 203 57.7 1.1e-06 gi|194373929|dbj|BAG62277.1| unnamed protein produ ( 264) 203 57.7 1.1e-06 >>gi|62088860|dbj|BAD92877.1| caspase 2 isoform 2 precur (144 aa) initn: 996 init1: 996 opt: 996 Z-score: 1334.6 bits: 252.9 E(): 1.1e-65 Smith-Waterman score: 996; 100.000% identity (100.000% similar) in 144 aa overlap (1-144:1-144) 10 20 30 40 50 60 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEKLPKMRLPTRSDMICGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEKLPKMRLPTRSDMICGY 10 20 30 40 50 60 70 80 90 100 110 120 sh0487 ACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPGTEFHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNALIKDREGYAPGTEFHR 70 80 90 100 110 120 130 140 sh0487 CKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::: gi|620 CKEMSEYCSTLCRHLYLFPGHPPT 130 140 >>gi|194381956|dbj|BAG64347.1| unnamed protein product [ (202 aa) initn: 921 init1: 921 opt: 921 Z-score: 1232.7 bits: 234.5 E(): 5.1e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:73-202) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|194 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 50 60 70 80 90 100 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 110 120 130 140 150 160 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|194 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 170 180 190 200 >>gi|109069351|ref|XP_001087704.1| PREDICTED: similar to (280 aa) initn: 921 init1: 921 opt: 921 Z-score: 1230.8 bits: 234.6 E(): 6.5e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:151-280) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|109 LQEVFRLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 130 140 150 160 170 180 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 190 200 210 220 230 240 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|109 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 250 260 270 280 >>gi|119572246|gb|EAW51861.1| hCG20684, isoform CRA_b [H (296 aa) initn: 921 init1: 921 opt: 921 Z-score: 1230.4 bits: 234.6 E(): 6.8e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:167-296) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|119 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 140 150 160 170 180 190 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 200 210 220 230 240 250 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|119 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 260 270 280 290 >>gi|194382554|dbj|BAG64447.1| unnamed protein product [ (336 aa) initn: 921 init1: 921 opt: 921 Z-score: 1229.7 bits: 234.7 E(): 7.5e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:207-336) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|194 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 180 190 200 210 220 230 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 240 250 260 270 280 290 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|194 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 300 310 320 330 >>gi|114616495|ref|XP_001162299.1| PREDICTED: caspase 2 (365 aa) initn: 921 init1: 921 opt: 921 Z-score: 1229.2 bits: 234.7 E(): 8e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:236-365) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|114 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 210 220 230 240 250 260 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 270 280 290 300 310 320 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|114 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 330 340 350 360 >>gi|114616497|ref|XP_001162379.1| PREDICTED: caspase 2 (421 aa) initn: 921 init1: 921 opt: 921 Z-score: 1228.3 bits: 234.8 E(): 8.9e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:292-421) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|114 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 270 280 290 300 310 320 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 330 340 350 360 370 380 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|114 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 390 400 410 420 >>gi|30583319|gb|AAP35904.1| caspase 2, apoptosis-relate (435 aa) initn: 921 init1: 921 opt: 921 Z-score: 1228.1 bits: 234.8 E(): 9.2e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:306-435) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|305 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 280 290 300 310 320 330 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 340 350 360 370 380 390 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|305 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 400 410 420 430 >>gi|537292|gb|AAA58959.1| ICH-1L gi|27978962|gb|AAO (435 aa) initn: 921 init1: 921 opt: 921 Z-score: 1228.1 bits: 234.8 E(): 9.2e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:306-435) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|537 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 280 290 300 310 320 330 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|537 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 340 350 360 370 380 390 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|537 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT 400 410 420 430 >>gi|30585251|gb|AAP36898.1| Homo sapiens caspase 2, apo (436 aa) initn: 921 init1: 921 opt: 921 Z-score: 1228.1 bits: 234.8 E(): 9.2e-60 Smith-Waterman score: 921; 100.000% identity (100.000% similar) in 130 aa overlap (15-144:306-435) 10 20 30 40 sh0487 EEVTSLSILSAFVTDETDRGVDQQDGKNHAGSPGCEESDAGKEK :::::::::::::::::::::::::::::: gi|305 LQEVFQLFDNANCPSLQNKPKMFFIQACRGDETDRGVDQQDGKNHAGSPGCEESDAGKEK 280 290 300 310 320 330 50 60 70 80 90 100 sh0487 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 LPKMRLPTRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERACDMHVADMLVKVNA 340 350 360 370 380 390 110 120 130 140 sh0487 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPT :::::::::::::::::::::::::::::::::::::::: gi|305 LIKDREGYAPGTEFHRCKEMSEYCSTLCRHLYLFPGHPPTL 400 410 420 430 144 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 17:58:31 2008 done: Wed Aug 13 18:01:31 2008 Total Scan time: 556.550 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]