hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-18073891/chunk_1/iprscan-20080813-18073891.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh06345 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00018.18.ls SH3 domain 148.9 1.3e-41 2 PF00018.18.fs SH3 domain 145.0 1.8e-40 2 PF07653.7.fs Variant SH3 domain 65.4 3.4e-18 2 PF07653.7.ls Variant SH3 domain 68.9 1.5e-17 2 PF00564.15.fs PB1 domain 50.9 7.7e-14 1 PF00564.15.ls PB1 domain 52.8 1e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/2 60 114 .. 1 59 [] 64.3 3.6e-16 PF00018.18.fs 1/2 60 114 .. 1 59 [] 62.4 2.7e-16 PF07653.7.ls 1/2 61 114 .. 1 69 [] 28.4 2.4e-05 PF07653.7.fs 1/2 61 114 .. 1 69 [] 26.6 5.1e-07 PF00564.15.fs 1/1 168 246 .. 1 89 [] 50.9 7.7e-14 PF00564.15.ls 1/1 168 246 .. 1 89 [] 52.8 1e-12 PF00018.18.ls 2/2 277 331 .. 1 59 [] 84.5 2.9e-22 PF00018.18.fs 2/2 277 331 .. 1 59 [] 82.6 7.9e-22 PF07653.7.ls 2/2 278 331 .. 1 69 [] 40.5 5.2e-09 PF07653.7.fs 2/2 281 331 .. 4 69 .] 38.8 1.6e-10 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 2, from 60 to 114: score 64.3, E = 3.6e-16 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + ++L+ +++++ +EL+ ++G +++vl+k +d +W ++ + G+ sh06345 60 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGND-NWATVMFN---GQ 102 eGliPsNYVepv<-* +Gl+P+NY+epv sh06345 103 KGLVPCNYLEPV 114 PF00018.18.fs: domain 1 of 2, from 60 to 114: score 62.4, E = 2.7e-16 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk + ++L+ +++++ +EL+ ++G +++vl+k +d +W ++ + G+ sh06345 60 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGND-NWATVMFN---GQ 102 eGliPsNYVepv<-* +Gl+P+NY+epv sh06345 103 KGLVPCNYLEPV 114 PF07653.7.ls: domain 1 of 2, from 61 to 114: score 28.4, E = 2.4e-05 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +r+++ +v+ + k+e L++ G +v V+ +k +d+w sh06345 61 AHRVLFGFVP-ETKEE------LQVMPGNIVFVL----KKGNDNWAT 96 geslggGrrrRGlvPssaveel<-* ++ +G++ GlvP +++e++ sh06345 97 VMF--NGQK--GLVPCNYLEPV 114 PF07653.7.fs: domain 1 of 2, from 61 to 114: score 26.6, E = 5.1e-07 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +r+++ +v+ + k+e L++ G +v V+ +k +d+w sh06345 61 AHRVLFGFVP-ETKEE------LQVMPGNIVFVL----KKGNDNWAT 96 geslggGrrrRGlvPssaveel<-* ++ +G++ GlvP +++e++ sh06345 97 VMF--NGQK--GLVPCNYLEPV 114 PF00564.15.fs: domain 1 of 1, from 168 to 246: score 50.9, E = 7.7e-14 *->tvriKlrygggirrfilsvsrgisfeeLrskvaqrfgld.vtfklkY ++++K++y++ +++ + ++g++++++r++v++++ l +++kl+Y sh06345 168 PYTLKVHYKYTVVM---KTQPGLPYSQVRDMVSKKLELRlEHTKLSY 211 pDeDgDdlVsitsDeDLeeaieearsllsesksktlrlhvfpa<-* + D ++lV+++ D+ +++a+ +++++ +l l++ + sh06345 212 RPRDSNELVPLSEDS-MKDAWGQVKNY-------CLTLWCENT 246 PF00564.15.ls: domain 1 of 1, from 168 to 246: score 52.8, E = 1e-12 *->tvriKlrygggirrfilsvsrgisfeeLrskvaqrfgld.vtfklkY ++++K++y++ +++ + ++g++++++r++v++++ l +++kl+Y sh06345 168 PYTLKVHYKYTVVM---KTQPGLPYSQVRDMVSKKLELRlEHTKLSY 211 pDeDgDdlVsitsDeDLeeaieearsllsesksktlrlhvfpa<-* + D ++lV+++ D+ +++a+ +++++ +l l++ + sh06345 212 RPRDSNELVPLSEDS-MKDAWGQVKNY-------CLTLWCENT 246 PF00018.18.ls: domain 2 of 2, from 277 to 331: score 84.5, E = 2.9e-22 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +v AL+ Yea+++++L F++GD+i vl+k+++ +W++g++k Gk sh06345 277 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNE-EWLEGECK---GK 319 eGliPsNYVepv<-* +G++P +Ve+ sh06345 320 VGIFPKVFVEDC 331 PF00018.18.fs: domain 2 of 2, from 277 to 331: score 82.6, E = 7.9e-22 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +v AL+ Yea+++++L F++GD+i vl+k+++ +W++g++k Gk sh06345 277 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNE-EWLEGECK---GK 319 eGliPsNYVepv<-* +G++P +Ve+ sh06345 320 VGIFPKVFVEDC 331 PF07653.7.ls: domain 2 of 2, from 278 to 331: score 40.5, E = 5.2e-09 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe + a+++y+a t +++ L +++Gd++ V+ sk +++w e sh06345 278 QVEALFSYEA-TQPED------LEFQEGDIILVL----SKVNEEWLE 313 geslggGrrrRGlvPssaveel<-* ge+ +G++ G +P +ve + sh06345 314 GEC--KGKV--GIFPKVFVEDC 331 PF07653.7.fs: domain 2 of 2, from 281 to 331: score 38.8, E = 1.6e-10 *->aiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwweges a+++y+a t +++ L +++Gd++ V+ sk +++w ege+ sh06345 281 ALFSYEA-TQPED------LEFQEGDIILVL----SKVNEEWLEGEC 316 lggGrrrRGlvPssaveel<-* +G++ G +P +ve + sh06345 317 --KGKV--GIFPKVFVEDC 331 //