hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18073891/chunk_1/iprscan-20080813-18073891.nocrc
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Query sequence: sh06345
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00326                                                 142.2    5.5e-38   2
SM00666                                                  49.1    5.7e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00326    1/2      60   115 ..     1    58 []    59.6    4e-13
SM00666    1/1     168   246 ..     1    95 []    49.1  5.7e-10
SM00326    2/2     277   332 ..     1    58 []    82.6  4.8e-20

Alignments of top-scoring domains:
SM00326: domain 1 of 2, from 60 to 115: score 59.6, E = 4e-13
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                      e  ++l+ + +++ +EL + +G i+ vl+k +d+W  +  n  G++G
     sh06345    60    EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFN--GQKG 104  

                   lfPsnYVeeie<-*
                   l+P+nY+e++e   
     sh06345   105 LVPCNYLEPVE    115  

SM00666: domain 1 of 1, from 168 to 246: score 49.1, E = 5.7e-10
                   *->tvdvKlrYvggetrrlsvprdisfedLrskvakrfgldneqpftLKY
                      ++++K++Y    t++++ +++++++++r++v+k++ l  e +++L+Y
     sh06345   168    PYTLKVHY--KYTVVMKTQPGLPYSQVRDMVSKKLELRLE-HTKLSY 211  

                   qLPDeDgDalVsltsDeDLeeaieeydslesskkSsgsktlrllvfvs<-
                   +    D +  ++  s++++++a+ +++          + +l l++  +  
     sh06345   212 R--PRDSN-ELVPLSEDSMKDAWGQVK----------NYCLTLWCENT   246  

                   *
                    
     sh06345     -   -    

SM00326: domain 2 of 2, from 277 to 332: score 82.6, E = 4.8e-20
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       +v Al++yea+++++L F++GDii+vl+k++++W+eGe++  Gk+G
     sh06345   277    SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGECK--GKVG 321  

                   lfPsnYVeeie<-*
                   +fP+ +Ve +    
     sh06345   322 IFPKVFVEDCA    332  

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