hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-18235049/chunk_1/iprscan-20080813-18235049.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sh06595 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00373.8.fs FERM domain (Band 4.1 family) 428.3 1.2e-133 1 PF00373.8.ls FERM domain (Band 4.1 family) 430.2 2.7e-126 1 PF05902.3.ls 4.1 protein C-terminal domain (CTD) 254.1 2.7e-73 1 PF05902.3.fs 4.1 protein C-terminal domain (CTD) 252.1 5.1e-73 1 PF04382.3.fs SAB domain 108.8 1.1e-30 1 PF04382.3.ls SAB domain 110.7 3.9e-30 1 PF08736.1.fs FERM adjacent (FA) 78.3 1.6e-21 1 PF08736.1.ls FERM adjacent (FA) 80.2 6e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00373.8.fs 1/1 229 418 .. 1 210 [] 428.3 1.2e-133 PF00373.8.ls 1/1 229 418 .. 1 210 [] 430.2 2.7e-126 PF08736.1.ls 1/1 513 559 .. 1 50 [] 80.2 6e-21 PF08736.1.fs 1/1 513 559 .. 1 50 [] 78.3 1.6e-21 PF04382.3.ls 1/1 614 678 .. 1 72 [] 110.7 3.9e-30 PF04382.3.fs 1/1 614 678 .. 1 72 [] 108.8 1.1e-30 PF05902.3.fs 1/1 710 824 .. 1 114 [] 252.1 5.1e-73 PF05902.3.ls 1/1 710 824 .. 1 114 [] 254.1 2.7e-73 Alignments of top-scoring domains: PF00373.8.fs: domain 1 of 1, from 229 to 418: score 428.3, E = 1.2e-133 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd c+v+llD+tv+e++veK++kGq+LL++V++hL+l+E+dYFGL+++D sh06595 229 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWD- 274 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT +++s+tWLd++K+i+kQ ++++P++++F+vKFYp+D p++L+++iT sh06595 275 ---NATSKTWLDSAKEIKKQ--VRGVPWNFTFNVKFYPPD-PAQLTEDIT 318 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC ry+++LQ++qdI++GrlpC+f+t++LL+SY++Qse+GDY+++lH+++ sh06595 319 RYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVD--- 365 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk Y+sd+kl+P n q ++++Eek++elHk++r+m+p++A+le+L+ sh06595 366 --YVSDFKLAP----N--Q--TKELEEKVMELHKSCRSMTPAQADLEFLE 405 iArdLemYGVdff<-* +A++L+mYGVd++ sh06595 406 NAKKLSMYGVDLH 418 PF00373.8.ls: domain 1 of 1, from 229 to 418: score 430.2, E = 2.7e-126 *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd c+v+llD+tv+e++veK++kGq+LL++V++hL+l+E+dYFGL+++D sh06595 229 CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWD- 274 DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT +++s+tWLd++K+i+kQ ++++P++++F+vKFYp+D p++L+++iT sh06595 275 ---NATSKTWLDSAKEIKKQ--VRGVPWNFTFNVKFYPPD-PAQLTEDIT 318 rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC ry+++LQ++qdI++GrlpC+f+t++LL+SY++Qse+GDY+++lH+++ sh06595 319 RYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVD--- 365 LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk Y+sd+kl+P n q ++++Eek++elHk++r+m+p++A+le+L+ sh06595 366 --YVSDFKLAP----N--Q--TKELEEKVMELHKSCRSMTPAQADLEFLE 405 iArdLemYGVdff<-* +A++L+mYGVd++ sh06595 406 NAKKLSMYGVDLH 418 PF08736.1.ls: domain 1 of 1, from 513 to 559: score 80.2, E = 6e-21 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p+skF+ lGSkFRYSGRTq+Qt++as+ i+R++p+FeR+ Skr sh06595 513 PKSKFL-ALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKR--A 556 rrs<-* +rs sh06595 557 SRS 559 PF08736.1.fs: domain 1 of 1, from 513 to 559: score 78.3, E = 1.6e-21 *->psskFfislGSkFRYSGRTqkQtveasseigRkppqFeRspSkryas p+skF+ lGSkFRYSGRTq+Qt++as+ i+R++p+FeR+ Skr sh06595 513 PKSKFL-ALGSKFRYSGRTQAQTRQASALIDRPAPHFERTASKR--A 556 rrs<-* +rs sh06595 557 SRS 559 PF04382.3.ls: domain 1 of 1, from 614 to 678: score 110.7, E = 3.9e-30 *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE kk e +e+ + + ++LDK+Q+e++KH+ASIsELK++FmE sh06595 614 KKEDEPPEQAEPEPTEA---WKDLDKSQEEIKKHHASISELKKNFME 657 snStpeprpnEWEREKRLsThSPvr<-* s +peprp+EW+ KRLsThSP+r sh06595 658 S--VPEPRPSEWD--KRLSTHSPFR 678 PF04382.3.fs: domain 1 of 1, from 614 to 678: score 108.8, E = 1.1e-30 *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE kk e +e+ + + ++LDK+Q+e++KH+ASIsELK++FmE sh06595 614 KKEDEPPEQAEPEPTEA---WKDLDKSQEEIKKHHASISELKKNFME 657 snStpeprpnEWEREKRLsThSPvr<-* s +peprp+EW+ KRLsThSP+r sh06595 658 S--VPEPRPSEWD--KRLSTHSPFR 678 PF05902.3.fs: domain 1 of 1, from 710 to 824: score 252.1, E = 5.1e-73 *->keeistksVpivnrevkTiTYesaqvDdga.dldpGvLltaqtiTsE k+ei+tk+Vpiv++e+kTiTYe+aq+Dd+++dldpGvLltaqtiTsE sh06595 710 KSEIPTKDVPIVHTETKTITYEAAQTDDNSgDLDPGVLLTAQTITSE 756 tlSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAke t+S+tTTT+iTKTvkgGisETriEkrivItgD+DiDhDq+L+qAIkEAke sh06595 757 TPSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKE 806 qhPDMsVtKvvVhqeTei<-* qhPDMsVtKvvVhqeTei sh06595 807 QHPDMSVTKVVVHQETEI 824 PF05902.3.ls: domain 1 of 1, from 710 to 824: score 254.1, E = 2.7e-73 *->keeistksVpivnrevkTiTYesaqvDdga.dldpGvLltaqtiTsE k+ei+tk+Vpiv++e+kTiTYe+aq+Dd+++dldpGvLltaqtiTsE sh06595 710 KSEIPTKDVPIVHTETKTITYEAAQTDDNSgDLDPGVLLTAQTITSE 756 tlSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAke t+S+tTTT+iTKTvkgGisETriEkrivItgD+DiDhDq+L+qAIkEAke sh06595 757 TPSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKE 806 qhPDMsVtKvvVhqeTei<-* qhPDMsVtKvvVhqeTei sh06595 807 QHPDMSVTKVVVHQETEI 824 //