hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18235049/chunk_1/iprscan-20080813-18235049.nocrc
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Query sequence: sh06595
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00295                                                 284.0    1.1e-80   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00295    1/1     223   418 ..     1   232 []   284.0  1.1e-80

Alignments of top-scoring domains:
SM00295: domain 1 of 1, from 223 to 418: score 284.0, E = 1.1e-80
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      +++ +++kV lld+t++e++v++++++++ll  vc++l+l  +e +y
     sh06595   223    KHRNMHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDY 267  

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                   FgL+ +d    ++Wld+ak+i+kq++      p+++ F vkFyppd    
     sh06595   268 FGLAIWDNATSKTWLDSAKEIKKQVRG----VPWNFTFNVKFYPPD---- 309  

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                   p ql+eD+try +l+lQ+r+di+ Grlpc+ + +++lL+++ +q+e+Gdy
     sh06595   310 PAQLTEDITRY-YLCLQLRQDIVAGRLPCS-FATLALLGSYTIQSELGDY 357  

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                   dpe         h + ++s++++ P+q               +ke++e++
     sh06595   358 DPE--------LHGVDYVSDFKLAPNQ---------------TKELEEKV 384  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                   +elhk +++++p++a+l++Le+a++L  +YGv+l+   
     sh06595   385 MELHKSCRSMTPAQADLEFLENAKKLS-MYGVDLH    418  

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