hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18301254/chunk_1/iprscan-20080813-18301254.nocrc
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Query sequence: sh07078
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00106.15.fs short chain dehydrogenase                      45.8    2.3e-12   1
PF00106.15.ls short chain dehydrogenase                     -33.2    0.00079   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00106.15.fs   1/1      54   158 ..     1   114 [.    45.8  2.3e-12
PF00106.15.ls   1/1      54   166 .]     1   181 []   -33.2  0.00079

Alignments of top-scoring domains:
PF00106.15.fs: domain 1 of 1, from 54 to 158: score 45.8, E = 2.3e-12
                   *->GTvLiTGGtGGLGlavARwLvaeHGArhLvLvsRrGpdapgaaeLrr
                       ++++TG t+G+G a+AR+L++  GA h+v  sR          +  
     sh07078    54    RVAVVTGSTSGIGFAIARRLARD-GA-HVVISSRK---QQNVDRA-- 93   

                   iavaeLealGaeVtvaacDVaDrdalaallaaipkaaegPLtgVVHaAGv
                      a L++ G +V+ + c V+ +++ ++l+a +  ++ g ++ +V  AGv
     sh07078    94 --MAKLQGEGLSVAGIVCHVGKAEDREQLVAKAL-EHCGGVDFLVCSAGV 140  

                   ld.DgvlesltperldaV<-*
                       g    ++++ +d+V   
     sh07078   141 NPlVGSTLGTSEQIWDKV    158  

PF00106.15.ls: domain 1 of 1, from 54 to 166: score -33.2, E = 0.00079
                   *->GTvLiTGGtGGLGlavARwLvaeHGArhLvLvsRrGpdapgaaeLrr
                       ++++TG t+G+G a+AR+L++  GA h+v  sR          +  
     sh07078    54    RVAVVTGSTSGIGFAIARRLARD-GA-HVVISSRK---QQNVDRA-- 93   

                   iavaeLealGaeVtvaacDVaDrdalaallaaipkaaegPLtgVVHaAGv
                      a L++ G +V+ + c V+ +++ ++l+a +  ++ g ++ +V  AGv
     sh07078    94 --MAKLQGEGLSVAGIVCHVGKAEDREQLVAKAL-EHCGGVDFLVCSAGV 140  

                   ld.DgvlesltperldaVlapKvdgAwhLheltrdlmikldrkeLdaFVl
                       g    ++++ +d+V               r+    l+         
     sh07078   141 NPlVGSTLGTSEQIWDKV---------------RG----LP--------- 162  

                   fSSaAGvlGspGQanYAAANAfLDaLAehRraeGL<-*
                          +G                        G    
     sh07078   163 -------WG------------------------GG    166  

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