# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osh07078.fasta.nr -Q sh07078.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sh07078, 166 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6822586 sequences Expectation_n fit: rho(ln(x))= 4.9363+/-0.00018; mu= 8.6360+/- 0.010 mean_var=72.6633+/-15.010, 0's: 38 Z-trim: 166 B-trim: 5693 in 2/66 Lambda= 0.150458 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088886|dbj|BAD92890.1| dehydrogenase/reductas ( 166) 1110 249.2 1.8e-64 gi|1079566|gb|AAA82048.1| Hep27 protein gi|112 ( 280) 924 209.0 3.9e-52 gi|31417985|gb|AAH02786.1| Dehydrogenase/reductase ( 300) 924 209.0 4.1e-52 gi|62897273|dbj|BAD96577.1| dehydrogenase/reductas ( 280) 914 206.8 1.7e-51 gi|39644649|gb|AAH07339.2| DHRS2 protein [Homo sap ( 271) 869 197.0 1.5e-48 gi|109083006|ref|XP_001109672.1| PREDICTED: simila ( 280) 855 194.0 1.3e-47 gi|109083008|ref|XP_001109713.1| PREDICTED: simila ( 281) 855 194.0 1.3e-47 gi|3915733|sp|Q13268|DHRS2_HUMAN Dehydrogenase/red ( 258) 764 174.2 1e-41 gi|194207163|ref|XP_001489552.2| PREDICTED: simila ( 328) 727 166.3 3.3e-39 gi|73962641|ref|XP_547738.2| PREDICTED: similar to ( 370) 685 157.2 2e-36 gi|194207165|ref|XP_001489532.2| PREDICTED: simila ( 338) 682 156.5 2.9e-36 gi|126278149|ref|XP_001380097.1| PREDICTED: simila ( 281) 617 142.4 4.5e-32 gi|114652224|ref|XP_001163973.1| PREDICTED: simila ( 152) 583 134.7 4.7e-30 gi|109502394|ref|XP_001055104.1| PREDICTED: simila ( 284) 583 135.0 7.5e-30 gi|126278152|ref|XP_001380104.1| PREDICTED: simila ( 287) 583 135.0 7.6e-30 gi|149063952|gb|EDM14222.1| rCG23486 [Rattus norve ( 289) 583 135.0 7.6e-30 gi|12856431|dbj|BAB30665.1| unnamed protein produc ( 282) 578 133.9 1.6e-29 gi|109734633|gb|AAI17732.1| Dehydrogenase/reductas ( 282) 578 133.9 1.6e-29 gi|119586531|gb|EAW66127.1| hCG2014792, isoform CR ( 142) 568 131.5 4.3e-29 gi|12858687|dbj|BAB31411.1| unnamed protein produc ( 216) 569 131.8 5e-29 gi|148704352|gb|EDL36299.1| dehydrogenase/reductas ( 279) 569 131.9 6.1e-29 gi|114652220|ref|XP_001164010.1| PREDICTED: peroxi ( 188) 567 131.4 6.1e-29 gi|50235109|gb|AAT70757.1| NADP(H)-dependent retin ( 188) 567 131.4 6.1e-29 gi|32450664|gb|AAH54361.1| Dehydrogenase/reductase ( 279) 568 131.7 7.1e-29 gi|114652218|ref|XP_001164623.1| PREDICTED: simila ( 192) 564 130.7 9.8e-29 gi|55728776|emb|CAH91127.1| hypothetical protein [ ( 278) 564 130.8 1.3e-28 gi|55727588|emb|CAH90549.1| hypothetical protein [ ( 278) 564 130.8 1.3e-28 gi|119586530|gb|EAW66126.1| hCG2014792, isoform CR ( 232) 563 130.6 1.3e-28 gi|114652204|ref|XP_001164322.1| PREDICTED: simila ( 233) 563 130.6 1.3e-28 gi|114652214|ref|XP_509859.2| PREDICTED: similar t ( 237) 563 130.6 1.3e-28 gi|114652206|ref|XP_001164430.1| PREDICTED: peroxi ( 238) 563 130.6 1.3e-28 gi|114652212|ref|XP_001163935.1| PREDICTED: peroxi ( 248) 563 130.6 1.4e-28 gi|114652200|ref|XP_001164583.1| PREDICTED: peroxi ( 263) 563 130.6 1.4e-28 gi|114652210|ref|XP_001164508.1| PREDICTED: peroxi ( 277) 563 130.6 1.5e-28 gi|12804321|gb|AAH03019.1| Dehydrogenase/reductase ( 278) 563 130.6 1.5e-28 gi|114652202|ref|XP_001164663.1| PREDICTED: peroxi ( 278) 563 130.6 1.5e-28 gi|109083022|ref|XP_001110093.1| PREDICTED: simila ( 188) 560 129.8 1.8e-28 gi|194207167|ref|XP_001489425.2| PREDICTED: simila ( 403) 563 130.8 2e-28 gi|109501662|ref|XP_001078405.1| PREDICTED: simila ( 284) 561 130.2 2.1e-28 gi|7023407|dbj|BAA91953.1| unnamed protein product ( 278) 558 129.5 3.2e-28 gi|109083018|ref|XP_001109992.1| PREDICTED: simila ( 238) 556 129.1 3.8e-28 gi|109083014|ref|XP_001110187.1| PREDICTED: simila ( 278) 556 129.1 4.3e-28 gi|78058375|gb|ABB17552.1| NADH-dependent retinal ( 279) 553 128.5 6.8e-28 gi|33337583|gb|AAQ13444.1|AF064256_1 Hep27-like pr ( 278) 552 128.2 7.8e-28 gi|57090449|ref|XP_547739.1| PREDICTED: similar to ( 278) 551 128.0 9.1e-28 gi|149063956|gb|EDM14226.1| dehydrogenase/reductas ( 202) 547 127.0 1.3e-27 gi|47477803|gb|AAH70961.1| Dehydrogenase/reductase ( 279) 547 127.2 1.7e-27 gi|19113668|gb|AAL61824.2| NADP-dependent retinol ( 174) 537 124.8 5.3e-27 gi|86827615|gb|AAI12879.1| DHRS4 protein [Bos taur ( 279) 539 125.4 5.6e-27 gi|11559414|dbj|BAB18776.1| NADPH-dependent retino ( 260) 537 125.0 7.1e-27 >>gi|62088886|dbj|BAD92890.1| dehydrogenase/reductase (S (166 aa) initn: 1110 init1: 1110 opt: 1110 Z-score: 1312.4 bits: 249.2 E(): 1.8e-64 Smith-Waterman score: 1110; 100.000% identity (100.000% similar) in 166 aa overlap (1-166:1-166) 10 20 30 40 50 60 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG 10 20 30 40 50 60 70 80 90 100 110 120 sh0707 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL 70 80 90 100 110 120 130 140 150 160 sh0707 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :::::::::::::::::::::::::::::::::::::::::::::: gi|620 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG 130 140 150 160 >>gi|1079566|gb|AAA82048.1| Hep27 protein gi|1127567 (280 aa) initn: 924 init1: 924 opt: 924 Z-score: 1091.2 bits: 209.0 E(): 3.9e-52 Smith-Waterman score: 924; 99.291% identity (100.000% similar) in 141 aa overlap (18-158:1-141) 10 20 30 40 50 60 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG ::::::::::::::::::::::::::::::::::::::::::: gi|107 MLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG 10 20 30 40 70 80 90 100 110 120 sh0707 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|107 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL 50 60 70 80 90 100 130 140 150 160 sh0707 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :::::::::::::::::::::::::::::::::::::. gi|107 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENR 110 120 130 140 150 160 gi|107 RGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFS 170 180 190 200 210 220 >>gi|31417985|gb|AAH02786.1| Dehydrogenase/reductase (SD (300 aa) initn: 924 init1: 924 opt: 924 Z-score: 1090.8 bits: 209.0 E(): 4.1e-52 Smith-Waterman score: 924; 99.291% identity (100.000% similar) in 141 aa overlap (18-158:1-141) 10 20 30 40 50 60 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG ::::::::::::::::::::::::::::::::::::::::::: gi|314 MLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG 10 20 30 40 70 80 90 100 110 120 sh0707 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|314 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL 50 60 70 80 90 100 130 140 150 160 sh0707 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :::::::::::::::::::::::::::::::::::::. gi|314 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENR 110 120 130 140 150 160 gi|314 RGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFS 170 180 190 200 210 220 >>gi|62897273|dbj|BAD96577.1| dehydrogenase/reductase (S (280 aa) initn: 914 init1: 914 opt: 914 Z-score: 1079.5 bits: 206.8 E(): 1.7e-51 Smith-Waterman score: 914; 98.582% identity (100.000% similar) in 141 aa overlap (18-158:1-141) 10 20 30 40 50 60 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG :::::::::::::.::::::::::::::::::::::::::::: gi|628 MLSAVARGYQGWFRPCARLSVRMSSTGIDRKGVLANRVAVVTG 10 20 30 40 70 80 90 100 110 120 sh0707 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL 50 60 70 80 90 100 130 140 150 160 sh0707 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :::::::::::::::::::::::::::::::::::::. gi|628 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPAPLLSQLLPYMENR 110 120 130 140 150 160 gi|628 RGAVILVSSVAAYNPVVALGVYSVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFS 170 180 190 200 210 220 >>gi|39644649|gb|AAH07339.2| DHRS2 protein [Homo sapiens (271 aa) initn: 869 init1: 869 opt: 869 Z-score: 1026.9 bits: 197.0 E(): 1.5e-48 Smith-Waterman score: 869; 99.242% identity (100.000% similar) in 132 aa overlap (27-158:1-132) 10 20 30 40 50 60 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG :::::::::::::::::::::::::::::::::: gi|396 QGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG 10 20 30 70 80 90 100 110 120 sh0707 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|396 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL 40 50 60 70 80 90 130 140 150 160 sh0707 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :::::::::::::::::::::::::::::::::::::. gi|396 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENR 100 110 120 130 140 150 gi|396 RGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFS 160 170 180 190 200 210 >>gi|109083006|ref|XP_001109672.1| PREDICTED: similar to (280 aa) initn: 855 init1: 855 opt: 855 Z-score: 1010.3 bits: 194.0 E(): 1.3e-47 Smith-Waterman score: 855; 90.780% identity (96.454% similar) in 141 aa overlap (18-158:1-141) 10 20 30 40 50 60 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG :: :::::.:::::::::::::::::::::::.::.::::::: gi|109 MLPAVARGHQGWFHPCARLSVRMSSTGIDRKGILAERVAVVTG 10 20 30 40 70 80 90 100 110 120 sh0707 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL ::::::::::::::.:::::::::::::::::: :.:: :::::::::::::::::::.: gi|109 STSGIGFAIARRLAQDGAHVVISSRKQQNVDRAAAQLQREGLSVAGIVCHVGKAEDRERL 50 60 70 80 90 100 130 140 150 160 sh0707 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :: :::::::.::::: ::::::::::::::::::::. gi|109 VATALEHCGGIDFLVCCAGVNPLVGSTLGTSEQIWDKILNVNVKSPALLLSQLLPYMEKR 110 120 130 140 150 160 gi|109 KGAVTLVSSVAAYFPRMELGVYNVSKTALLALTRTLALELAPKDIRVNCLVPGVIKTDFS 170 180 190 200 210 220 >>gi|109083008|ref|XP_001109713.1| PREDICTED: similar to (281 aa) initn: 855 init1: 855 opt: 855 Z-score: 1010.2 bits: 194.0 E(): 1.3e-47 Smith-Waterman score: 855; 90.780% identity (96.454% similar) in 141 aa overlap (18-158:1-141) 10 20 30 40 50 60 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTG :: :::::.:::::::::::::::::::::::.::.::::::: gi|109 MLPAVARGHQGWFHPCARLSVRMSSTGIDRKGILAERVAVVTG 10 20 30 40 70 80 90 100 110 120 sh0707 STSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQL ::::::::::::::.:::::::::::::::::: :.:: :::::::::::::::::::.: gi|109 STSGIGFAIARRLAQDGAHVVISSRKQQNVDRAAAQLQREGLSVAGIVCHVGKAEDRERL 50 60 70 80 90 100 130 140 150 160 sh0707 VAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :: :::::::.::::: ::::::::::::::::::::. gi|109 VATALEHCGGIDFLVCCAGVNPLVGSTLGTSEQIWDKILNVNVKSPALLLSQLLPYMEKR 110 120 130 140 150 160 gi|109 RGGAVTLVSSVAAYFPRMELGVYNVSKTALLALTRTLALELAPKDIRVNCLVPGVIKTDF 170 180 190 200 210 220 >>gi|3915733|sp|Q13268|DHRS2_HUMAN Dehydrogenase/reducta (258 aa) initn: 764 init1: 764 opt: 764 Z-score: 904.0 bits: 174.2 E(): 1e-41 Smith-Waterman score: 764; 99.160% identity (100.000% similar) in 119 aa overlap (40-158:1-119) 10 20 30 40 50 60 sh0707 EASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGIDRKGVLANRVAVVTGSTSGIGFAI :::::::::::::::::::::::::::::: gi|391 MSSTGIDRKGVLANRVAVVTGSTSGIGFAI 10 20 30 70 80 90 100 110 120 sh0707 ARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 ARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCG 40 50 60 70 80 90 130 140 150 160 sh0707 GVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG ::::::::::::::::::::::::::::. gi|391 GVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENRRGAVILVSS 100 110 120 130 140 150 >>gi|194207163|ref|XP_001489552.2| PREDICTED: similar to (328 aa) initn: 741 init1: 715 opt: 727 Z-score: 859.2 bits: 166.3 E(): 3.3e-39 Smith-Waterman score: 727; 74.194% identity (87.742% similar) in 155 aa overlap (5-158:36-189) 10 20 30 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWF-HPC : .::::.:. .: :.:.: .: . :: gi|194 TRTQEREEHSQEADQIPRFKDQQGSLPSKQGQVQQEADQAMATRLQAAAWVQRGQLRHP- 10 20 30 40 50 60 40 50 60 70 80 90 sh0707 ARLSVRMSSTGIDRKGVLANRVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRA : :::. : :::.::.::::::::::::.:::::::::::.::::::.:::::::::.: gi|194 AGLSVQKISRGIDQKGILANRVAVVTGSTNGIGFAIARRLAQDGAHVVVSSRKQQNVDQA 70 80 90 100 110 120 100 110 120 130 140 150 sh0707 MAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQ .: :: ::::: : :::::::::::.::: ::.::::.::::: :::::::::::::::: gi|194 VAALQEEGLSVMGTVCHVGKAEDRERLVATALQHCGGIDFLVCVAGVNPLVGSTLGTSEQ 130 140 150 160 170 180 160 sh0707 IWDKVRGLPWGGG .:::. gi|194 VWDKIVDVNLKSPVLLLSQLLPHMEKRGGAVILVSSLAAYMPLVELGVYNVSKTALLGLT 190 200 210 220 230 240 >>gi|73962641|ref|XP_547738.2| PREDICTED: similar to deh (370 aa) initn: 675 init1: 675 opt: 685 Z-score: 809.2 bits: 157.2 E(): 2e-36 Smith-Waterman score: 685; 75.352% identity (90.845% similar) in 142 aa overlap (17-158:89-230) 10 20 30 40 sh0707 FFPPGLIQQEASQTPTTMLSAVARGYQGWFHPCARLSVRMSSTGID .:..::: .: :. : :::::.::::: gi|739 CPLGFPTSFSGCLNCSAWAKFSRKQKKALASMFQAVAYVSRGLFRSYAGLSVRMNSTGID 60 70 80 90 100 110 50 60 70 80 90 100 sh0707 RKGVLANRVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAG .:::::::::::::.:.::::::::::::::::::.:::::.:::::.: ::::::::.: gi|739 QKGVLANRVAVVTGATDGIGFAIARRLARDGAHVVVSSRKQHNVDRAVAALQGEGLSVTG 120 130 140 150 160 170 110 120 130 140 150 160 sh0707 IVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKVRGLPWGGG :::::::::::.::: .::: ::.:::::.:.::::: ::: .::..:::. gi|739 TVCHVGKAEDRERLVATVLEHYGGLDFLVCNAAVNPLVRSTLQASEEVWDKILDVNVKSP 180 190 200 210 220 230 gi|739 ALLLSQLLPHMENRGMGAVILVSSIAAYIPHVELGPYNVSKTALLGLTRTLSLELAPKGI 240 250 260 270 280 290 166 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 18:27:16 2008 done: Wed Aug 13 18:30:11 2008 Total Scan time: 598.070 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]