hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-18104110/chunk_1/iprscan-20090416-18104110.nocrc
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Query sequence: sh07176
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       220.0    4.8e-63   7
PF00400.22.fs WD domain, G-beta repeat                       209.1    9.3e-60   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/7      45    83 ..     1    38 []    28.9  3.6e-07
PF00400.22.ls   1/7      45    83 ..     1    38 []    30.9  4.2e-06
PF00400.22.ls   2/7      87   125 ..     1    38 []    24.4  0.00037
PF00400.22.fs   2/7      87   125 ..     1    38 []    22.4  2.4e-05
PF00400.22.fs   3/7     133   170 ..     1    38 []    29.7  2.2e-07
PF00400.22.ls   3/7     133   170 ..     1    38 []    31.6  2.5e-06
PF00400.22.fs   4/7     174   212 ..     1    38 []    41.7  8.6e-11
PF00400.22.ls   4/7     174   212 ..     1    38 []    43.7  5.8e-10
PF00400.22.fs   5/7     216   254 ..     1    38 []    37.3  1.6e-09
PF00400.22.ls   5/7     216   254 ..     1    38 []    39.2  1.3e-08
PF00400.22.fs   6/7     272   298 ..    11    38 .]    18.4  0.00032
PF00400.22.ls   7/7     302   340 .]     1    38 []    32.7  1.2e-06
PF00400.22.fs   7/7     302   340 .]     1    38 []    30.7  1.1e-07

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 7, from 45 to 83: score 28.9, E = 3.6e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          ++l+gH + ++++ +  d ++ll+s+S Dg++ iWd   
     sh07176    45    MRTRrTLrGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWD    83   

PF00400.22.ls: domain 1 of 7, from 45 to 83: score 30.9, E = 4.2e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          ++l+gH + ++++ +  d ++ll+s+S Dg++ iWd   
     sh07176    45    MRTRrTLrGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWD    83   

PF00400.22.ls: domain 2 of 7, from 87 to 125: score 24.4, E = 0.00037
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + ++ ++  +s+V+ +a++p+ g+++a+g+ D+ + i++   
     sh07176    87    TNKVhAIpLRSSWVMTCAYAPS-GNFVACGGLDNICSIYS    125  

PF00400.22.fs: domain 2 of 7, from 87 to 125: score 22.4, E = 2.4e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + ++ ++  +s+V+ +a++p+ g+++a+g+ D+ + i++   
     sh07176    87    TNKVhAIpLRSSWVMTCAYAPS-GNFVACGGLDNICSIYS    125  

PF00400.22.fs: domain 3 of 7, from 133 to 170: score 29.7, E = 2.2e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        + ++l+gHt+  +c++f  d  ++++++S D t+ +Wd   
     sh07176   133    VRVSrELpGHTGYLSCCRFLDD--NQIITSSGDTTCALWD    170  

PF00400.22.ls: domain 3 of 7, from 133 to 170: score 31.6, E = 2.5e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        + ++l+gHt+  +c++f  d  ++++++S D t+ +Wd   
     sh07176   133    VRVSrELpGHTGYLSCCRFLDD--NQIITSSGDTTCALWD    170  

PF00400.22.fs: domain 4 of 7, from 174 to 212: score 41.7, E = 8.6e-11
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+++  + gH++ V++++ +pd g++++sg +D +ik+Wd   
     sh07176   174    GQQTvGFaGHSGDVMSLSLAPD-GRTFVSGACDASIKLWD    212  

PF00400.22.ls: domain 4 of 7, from 174 to 212: score 43.7, E = 5.8e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+++  + gH++ V++++ +pd g++++sg +D +ik+Wd   
     sh07176   174    GQQTvGFaGHSGDVMSLSLAPD-GRTFVSGACDASIKLWD    212  

PF00400.22.fs: domain 5 of 7, from 216 to 254: score 37.3, E = 1.6e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        c +++ gH+s +++vaf p+ g  + +gS+D t++++d   
     sh07176   216    SMCRqTFiGHESDINAVAFFPN-GYAFTTGSDDATCRLFD    254  

PF00400.22.ls: domain 5 of 7, from 216 to 254: score 39.2, E = 1.3e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        c +++ gH+s +++vaf p+ g  + +gS+D t++++d   
     sh07176   216    SMCRqTFiGHESDINAVAFFPN-GYAFTTGSDDATCRLFD    254  

PF00400.22.fs: domain 6 of 7, from 272 to 298: score 18.4, E = 0.00032
                   *->tVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++t+vafs + g+ll+ g +D ++ iWd   
     sh07176   272    GITSVAFSRS-GRLLLAGYDDFNCNIWD    298  

PF00400.22.ls: domain 7 of 7, from 302 to 340: score 32.7, E = 1.2e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+  +vl gH + V+c+ +  d g  +a+gS+D  +kiW+   
     sh07176   302    GDRAgVLaGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN    340  

PF00400.22.fs: domain 7 of 7, from 302 to 340: score 30.7, E = 1.1e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+  +vl gH + V+c+ +  d g  +a+gS+D  +kiW+   
     sh07176   302    GDRAgVLaGHDNRVSCLGVTDD-GMAVATGSWDSFLKIWN    340  

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