hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18472959/chunk_1/iprscan-20080813-18472959.nocrc
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Query sequence: sj00191
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       23.8    8.7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      56   123 ..    29    92 .]    23.8  8.7e-07

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 56 to 123: score 23.8, E = 8.7e-07
                   *->lyykdkkkkpkgsipLsgiqvtkvpdn...krkncFeirt.dretll
                      l+ +++ ++  gs+ L +++++++ ++ +++r+++F   +++ +t++
     sj00191    56    LFADSREESVLGSVLLPSYNIRPDGPGaprGRRFTFTAEHpGMRTYV 102  

                   lqaeseeerkeWvkaiqsair<-*
                   l+a++ e+++ W++a+ +a+r   
     sj00191   103 LAADTLEDLRGWLRALGRASR    123  

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