hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18531701/chunk_1/iprscan-20080813-18531701.nocrc
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Query sequence: sj00220
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                  136.5    3.7e-40   1
PF00621.11.ls RhoGEF domain                                  138.3      2e-38   1
PF00169.19.fs PH domain                                       30.8    6.4e-09   1
PF00169.19.ls PH domain                                       32.8    1.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     186   361 ..     1   207 []   136.5  3.7e-40
PF00621.11.ls   1/1     186   361 ..     1   207 []   138.3    2e-38
PF00169.19.fs   1/1     393   485 ..     1    92 []    30.8  6.4e-09
PF00169.19.ls   1/1     393   485 ..     1    92 []    32.8  1.1e-06

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 186 to 361: score 136.5, E = 3.7e-40
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v+ E+leTE++Yv+dL  ++ +y+   r+  + +   L+ ++ +++F
     sj00220   186    VVQEILETERTYVQDLKSIVEDYLDCIRDQTKLP---LGTEERSALF 229  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +Ni diy f++e+L+  Le++  +              +  ++ +F +  
     sj00220   230 GNIQDIYHFNSELLQ-DLENCEND--------------PVAIAECFVSK- 263  

                   aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   +e + +Y+ Yc+n+p+++ +l+     +  ++F+++ +e  ++       
     sj00220   264 SEEFHIYTQYCTNYPRSVAVLTECMRNKILAKFFRERQETLKH------- 306  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
                       l L s+LlkPvqRil+Y+LLL+e+  h++   d +++    +a+d 
     sj00220   307 ---SLPLGSYLLKPVQRILKYHLLLHEIENHLDK--DTEGYDVVLDAIDT 351  

                   lqdlaksiNe<-*
                   +q++a +iN+   
     sj00220   352 MQRVAWHIND    361  

PF00621.11.ls: domain 1 of 1, from 186 to 361: score 138.3, E = 2e-38
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF
                      v+ E+leTE++Yv+dL  ++ +y+   r+  + +   L+ ++ +++F
     sj00220   186    VVQEILETERTYVQDLKSIVEDYLDCIRDQTKLP---LGTEERSALF 229  

                   sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk
                   +Ni diy f++e+L+  Le++  +              +  ++ +F +  
     sj00220   230 GNIQDIYHFNSELLQ-DLENCEND--------------PVAIAECFVSK- 263  

                   aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   +e + +Y+ Yc+n+p+++ +l+     +  ++F+++ +e  ++       
     sj00220   264 SEEFHIYTQYCTNYPRSVAVLTECMRNKILAKFFRERQETLKH------- 306  

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkalda
                       l L s+LlkPvqRil+Y+LLL+e+  h++   d +++    +a+d 
     sj00220   307 ---SLPLGSYLLKPVQRILKYHLLLHEIENHLDK--DTEGYDVVLDAIDT 351  

                   lqdlaksiNe<-*
                   +q++a +iN+   
     sj00220   352 MQRVAWHIND    361  

PF00169.19.fs: domain 1 of 1, from 393 to 485: score 30.8, E = 6.4e-09
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk..kkpkgsipLs
                      ++ eG ++ +       +R ++Lfd+ Ll+ k++++++++k  i   
     sj00220   393    LVLEGTFRIQR---AKNERTLFLFDKLLLITKKRDdtFTYKAHILCG 436  

                   gi.qvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsai
                   ++  v+ +p+  ++ +F + +  +++ ++++qa+s+++++ Wv +++++i
     sj00220   437 NLmLVEVIPK--EPLSFSVFHyKNpkLQHTVQAKSQQDKRLWVLHLKRLI 484  

                   r<-*
                       
     sj00220   485 L    485  

PF00169.19.ls: domain 1 of 1, from 393 to 485: score 32.8, E = 1.1e-06
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk..kkpkgsipLs
                      ++ eG ++ +       +R ++Lfd+ Ll+ k++++++++k  i   
     sj00220   393    LVLEGTFRIQR---AKNERTLFLFDKLLLITKKRDdtFTYKAHILCG 436  

                   gi.qvtkvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsai
                   ++  v+ +p+  ++ +F + +  +++ ++++qa+s+++++ Wv +++++i
     sj00220   437 NLmLVEVIPK--EPLSFSVFHyKNpkLQHTVQAKSQQDKRLWVLHLKRLI 484  

                   r<-*
                       
     sj00220   485 L    485  

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