hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18531701/chunk_1/iprscan-20080813-18531701.nocrc
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Query sequence: sj00220
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 190.4    1.7e-52   1
SM00233                                                  36.0      5e-06   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     186   361 ..     1   211 []   190.4  1.7e-52
SM00233     1/1     393   487 ..     1    82 []    36.0    5e-06

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 186 to 361: score 190.4, E = 1.7e-52
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      v++E+l+TEr+YV+dLk +ve +l  +++  +++l  +l  +e   l
     sj00220   186    VVQEILETERTYVQDLKSIVEDYLDCIRD--QTKL--PLGTEERSAL 228  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   Fg Ni++iy f++++L++Le + ++                  +  i+ +
     sj00220   229 FG-NIQDIYHFNSELLQDLENCEND------------------PVAIAEC 259  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                   F+     +e f+iY++Yc n+p+++++l++ m    n+ ++kf++e+++ 
     sj00220   260 FVSK---SEEFHIYTQYCTNYPRSVAVLTECM---RNKILAKFFRERQET 303  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                     ++      l+L s+L+kPvQR++kY+LLL+e++ h ++d e ++ + +
     sj00220   304 LKHS------LPLGSYLLKPVQRILKYHLLLHEIENHLDKDTEGYDVVLD 347  

                   AleaikelasqvNe<-*
                   A++ ++++a ++N+   
     sj00220   348 AIDTMQRVAWHIND    361  

SM00233: domain 1 of 1, from 393 to 487: score 36.0, E = 5e-06
                   *->vikeGwLlkkskswkkryfvLfngvLlyyksk....kpkgsipLsgc
                      +++eG+ +++     +r ++Lf++ Ll++k+++++ ++k  i   ++
     sj00220   393    LVLEGTFRIQR-AKNERTLFLFDKLLLITKKRddtfTYKAHILCGNL 438  

                   .svre.p....cFeivt.dr...tlllqAeseeereeWvealqsaiaka<
                     v++ p+++ +F +++ ++++  +++qA+s+++++ Wv +l+++i ++ 
     sj00220   439 mLVEViPkeplSFSVFHyKNpklQHTVQAKSQQDKRLWVLHLKRLILEN  487  

                   -*
                     
     sj00220     -    -    

//