hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-18591447/chunk_1/iprscan-20080813-18591447.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj00324 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01391.8.fs Collagen triple helix repeat (20 copies) 701.2 6.9e-208 25 PF01391.8.ls Collagen triple helix repeat (20 copies) 504.4 1.2e-148 14 PF08949.1.fs Domain of unknown function (DUF1860) 43.6 4.1e-15 14 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01391.8.ls 1/14 265 324 .. 1 60 [] 47.1 5.5e-11 PF01391.8.fs 2/25 265 314 .. 1 50 [. 35.9 8e-09 PF01391.8.fs 3/25 319 349 .. 25 55 .. 17.7 0.00056 PF01391.8.fs 4/25 361 399 .. 22 60 .] 18.8 0.00029 PF01391.8.ls 3/14 466 524 .. 1 60 [] 32.0 1.9e-06 PF01391.8.fs 7/25 474 524 .. 10 60 .] 42.9 1.1e-10 PF01391.8.fs 9/25 560 611 .. 1 52 [. 41.1 3.3e-10 PF01391.8.ls 4/14 560 619 .. 1 60 [] 46.3 9.7e-11 PF01391.8.fs 11/25 646 676 .. 1 31 [. 23.0 2.2e-05 PF01391.8.fs 12/25 677 731 .. 6 60 .] 43.9 6e-11 PF01391.8.ls 5/14 687 745 .. 1 60 [] 27.2 8.3e-06 PF01391.8.fs 13/25 732 765 .. 1 35 [. 26.1 3.3e-06 PF01391.8.fs 14/25 778 810 .. 28 60 .] 29.3 4.4e-07 PF01391.8.fs 16/25 886 921 .. 1 36 [. 24.5 8.4e-06 PF01391.8.ls 7/14 898 957 .. 1 60 [] 53.8 5.2e-13 PF01391.8.fs 17/25 922 981 .. 1 60 [] 59.0 5.5e-15 PF01391.8.ls 8/14 973 1032 .. 1 60 [] 60.2 6.3e-15 PF01391.8.fs 18/25 982 1041 .. 1 60 [] 56.1 3.4e-14 PF01391.8.ls 9/14 1036 1095 .. 1 60 [] 43.9 5.1e-10 PF01391.8.fs 19/25 1054 1106 .. 1 53 [. 47.3 7.3e-12 PF01391.8.fs 20/25 1108 1167 .. 1 60 [] 43.0 1e-10 PF01391.8.ls 10/14 1108 1167 .. 1 60 [] 45.0 2.4e-10 PF01391.8.fs 21/25 1173 1232 .. 1 60 [] 49.0 2.7e-12 PF01391.8.ls 11/14 1173 1232 .. 1 60 [] 50.9 3.8e-12 PF01391.8.ls 12/14 1233 1292 .. 1 60 [] 45.1 2.1e-10 PF01391.8.fs 22/25 1233 1292 .. 1 60 [] 43.2 9.3e-11 PF01391.8.ls 13/14 1327 1385 .. 1 60 [] 29.9 6e-06 PF01391.8.fs 23/25 1331 1385 .. 6 60 .] 33.2 4.1e-08 PF01391.8.fs 25/25 1405 1436 .. 1 32 [. 17.3 0.00071 Alignments of top-scoring domains: PF01391.8.ls: domain 1 of 14, from 265 to 324: score 47.1, E = 5.5e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+G+ G+ G+ Gp G pG +G++G +G++G+ G +G PG pG++G sj00324 265 GPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGR 311 pGppGapGapGpp<-* pG+ +G++G+ sj00324 312 PGEICVIGPKGQK 324 PF01391.8.fs: domain 2 of 25, from 265 to 314: score 35.9, E = 8e-09 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp+G+ G+ G+ Gp G pG +G++G +G++G+ G +G PG pG++G sj00324 265 GPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGR 311 pGp<-* pG+ sj00324 312 PGE 314 PF01391.8.fs: domain 3 of 25, from 319 to 349: score 17.7, E = 0.00056 *->GapGppGppGepGpPGppGppGppGppGapG<-* G++G +G+pG+ Gp G +G+pGppG pG+pG sj00324 319 GPKGQKGDPGFVGPEGLAGEPGPPGLPGPPG 349 PF01391.8.fs: domain 4 of 25, from 361 to 399: score 18.8, E = 0.00029 *->GpaGapGppGppGepGpPGppGppGppGppGapGapGpp<-* Gp+G++G++G +G pG Gp G+pG pG +G++G+p ++ sj00324 361 GPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEV 399 PF01391.8.ls: domain 3 of 14, from 466 to 524: score 32.0, E = 1.9e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G G+pG G+pG pG++G pG +G++G+ G +G++G+PGppGp Gp sj00324 466 GDVGSPGF-GLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGP 511 pGppGapGapGpp<-* +G +Ga+G+p +p sj00324 512 AGIKGAKGEPCEP 524 PF01391.8.fs: domain 7 of 25, from 474 to 524: score 42.9, E = 1.1e-10 *->GppGppGppGppGpaGapGppGppGepGpPGppGppGppGppGapGa G+pG pG++G pG +G++G+ G +G++G+PGppGp Gp+G +Ga+G+ sj00324 474 GLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGE 520 pGpp<-* p +p sj00324 521 PCEP 524 PF01391.8.fs: domain 9 of 25, from 560 to 611: score 41.1, E = 3.3e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G++G++G+ G++G++G pG++G pG G pG +G+PG +Gp+Gp sj00324 560 GKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGP 606 pGppG<-* +G++G sj00324 607 KGEKG 611 PF01391.8.ls: domain 4 of 14, from 560 to 619: score 46.3, E = 9.7e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+ G++G++G+ G++G++G pG++G pG G pG +G+PG +Gp+Gp sj00324 560 GKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGP 606 pGppGapGapGpp<-* +G++G + p sj00324 607 KGEKGDGCTACPS 619 PF01391.8.fs: domain 11 of 25, from 646 to 676: score 23.0, E = 2.2e-05 *->GppGppGppGppGppGppGppGpaGapGppG<-* G+pG+pG pG+pG GppG +G +G+pGppG sj00324 646 GRPGKPGQPGLPGVQGPPGLKGVQGEPGPPG 676 PF01391.8.fs: domain 12 of 25, from 677 to 731: score 43.9, E = 6e-11 *->pGppGppGppGppGppGpaGapGppGppGepGpPGppGppGppGppG +G Gp+G+pG+pG pG +G pGp+GppG+ G+ G++G pG +G +G sj00324 677 RGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATG 723 apGapGpp<-* + G+pG+ sj00324 724 PVGPPGAS 731 PF01391.8.ls: domain 5 of 14, from 687 to 745: score 27.2, E = 8.3e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G+pG+pG G+pGp+GppGp+G++Ga+G+pG +G+ Gp GppG+ sj00324 687 GAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGAS-V 732 pGppGapGapGpp<-* GppG++G G+ sj00324 733 SGPPGRDGQQGQT 745 PF01391.8.fs: domain 13 of 25, from 732 to 765: score 26.1, E = 3.3e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGe<-* GppG+ G +G++G +G pG++G++G++G pGe sj00324 732 -VSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGE 765 PF01391.8.fs: domain 14 of 25, from 778 to 810: score 29.3, E = 4.4e-07 *->GppGppGepGpPGppGppGppGppGapGapGpp<-* G+pGppG pGpPGppG+pG +G pG+ G pG+p sj00324 778 GMPGPPGIPGPPGPPGVPGLQGVPGNNGLPGQP 810 PF01391.8.fs: domain 16 of 25, from 886 to 921: score 24.5, E = 8.4e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGep<-* G pG G+pG+pGppG pG+ G+ G+pG++G pG+p sj00324 886 GDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPP 921 PF01391.8.ls: domain 7 of 14, from 898 to 957: score 53.8, E = 5.2e-13 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppG+pG +G+ GppG +G pGp+G+ G +G +G G G +G+pGp sj00324 898 GPPGLPGQRGEEGPPGMRGSPGPPGPIGLQGERGLTGLTGDKGEPGP 944 pGppGapGapGpp<-* pG+pG pGa Gpp sj00324 945 PGQPGYPGATGPP 957 PF01391.8.fs: domain 17 of 25, from 922 to 981: score 59.0, E = 5.5e-15 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp Gp G++G++G++G +G++G+pGp+G pG pG+ G+pG PG +G+ G sj00324 922 GPIGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGY 968 pGppGapGapGpp<-* G +G++G+pGpp sj00324 969 TGSAGEKGEPGPP 981 PF01391.8.ls: domain 8 of 14, from 973 to 1032: score 60.2, E = 6.3e-15 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G++G+pGppG G pGppGp+Gp+G++Gp+G++Ge+G +G +G+pG+ sj00324 973 GEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGF 1019 pGppGapGapGpp<-* pGppG+pG pG++ sj00324 1020 PGPPGPPGFPGKV 1032 PF01391.8.fs: domain 18 of 25, from 982 to 1041: score 56.1, E = 3.4e-14 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G G+pGppGp+Gp+G++Gp+G++G++G++G +G pG+PGppGppG+ sj00324 982 GSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGF 1028 pGppGapGapGpp<-* pG G pG+pGp sj00324 1029 PGKVGSPGPPGPQ 1041 PF01391.8.ls: domain 9 of 14, from 1036 to 1095: score 43.9, E = 5.1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp GppGp+ ++G G +Gp+G pG +G+pGppG +G++G +G +G++G sj00324 1036 GPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGK 1082 pGppGapGapGpp<-* pG +G pG++Gpp sj00324 1083 PGLRGDPGPAGPP 1095 PF01391.8.fs: domain 19 of 25, from 1054 to 1106: score 47.3, E = 7.3e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG+pGppGppG Gp+G G +G+ G pG +G+pGp GppG +Gp sj00324 1054 GLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGP 1100 pGppGa<-* pG +G+ sj00324 1101 PGFKGK 1106 PF01391.8.fs: domain 20 of 25, from 1108 to 1167: score 43.0, E = 1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG+pGp+G+ G pGppG +G +Ga G+pG+ G+ G+PGppG+ Gp sj00324 1108 GHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGP 1154 pGppGapGapGpp<-* pGppG+pG++G sj00324 1155 PGPPGQPGPAGIS 1167 PF01391.8.ls: domain 10 of 14, from 1108 to 1167: score 45.0, E = 2.4e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G pG+pGp+G+ G pGppG +G +Ga G+pG+ G+ G+PGppG+ Gp sj00324 1108 GHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGP 1154 pGppGapGapGpp<-* pGppG+pG++G sj00324 1155 PGPPGQPGPAGIS 1167 PF01391.8.fs: domain 21 of 25, from 1173 to 1232: score 49.0, E = 2.7e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G G++G++G pG pGppG++G+pG+pG G++G GppG+ G+ sj00324 1173 GDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGF 1219 pGppGapGapGpp<-* GppG++G+pG++ sj00324 1220 YGPPGPKGDPGAA 1232 PF01391.8.ls: domain 11 of 14, from 1173 to 1232: score 50.9, E = 3.8e-12 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G G++G++G pG pGppG++G+pG+pG G++G GppG+ G+ sj00324 1173 GDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGF 1219 pGppGapGapGpp<-* GppG++G+pG++ sj00324 1220 YGPPGPKGDPGAA 1232 PF01391.8.ls: domain 12 of 14, from 1233 to 1292: score 45.1, E = 2.1e-10 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G++G++G +G+pG pG G G+ GppGp+Ge+G PG+pGp G+ sj00324 1233 GQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGS 1279 pGppGapGapGpp<-* pG pG pG++G sj00324 1280 PGLPGVPGSMGDM 1292 PF01391.8.fs: domain 22 of 25, from 1233 to 1292: score 43.2, E = 9.3e-11 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp G +G++G++G +G+pG pG G G+ GppGp+Ge+G PG+pGp G+ sj00324 1233 GQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGS 1279 pGppGapGapGpp<-* pG pG pG++G sj00324 1280 PGLPGVPGSMGDM 1292 PF01391.8.ls: domain 13 of 14, from 1327 to 1385: score 29.9, E = 6e-06 *->GppGppGppGppGppGppGppGpaGapGppGppGepGpPGppGppGp + pG+pGppG +G+pG pG++G+pG pG G G++G pG+ G sj00324 1327 -MAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGL 1372 pGppGapGapGpp<-* pG +G++G+ G sj00324 1373 PGTKGEKGDIGIG 1385 PF01391.8.fs: domain 23 of 25, from 1331 to 1385: score 33.2, E = 4.1e-08 *->pGppGppGppGppGppGpaGapGppGppGepGpPGppGppGppGppG pG+pGppG +G+pG pG++G+pG pG G G++G pG+ G pG +G sj00324 1331 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKG 1377 apGapGpp<-* ++G+ G sj00324 1378 EKGDIGIG 1385 PF01391.8.fs: domain 25 of 25, from 1405 to 1436: score 17.3, E = 0.00071 *->GppGppGppGppGppGppGppGpaGapGppGp<-* G+ G Gp G +G pG pGppGp G pG +G+ sj00324 1405 GKMGATGPMGQQGIPGIPGPPGPMGQPGKAGH 1436 //