hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-18591447/chunk_1/iprscan-20080813-18591447.nocrc
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Query sequence: sj00324
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00210                                                 101.9    7.5e-26   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00210           1/1       1   121 [.     1   218 []   101.9  7.5e-26

Alignments of top-scoring domains:
SM00210: domain 1 of 1, from 1 to 121: score 101.9, E = 7.5e-26
                   *->gfdllqvldLpessfgvrkvvglhatirvrGsdpsspAYrfgdidri
                                                                     
     sj00324     -    ----------------------------------------------- -    

                   pavvsqptrklfPasglpedFsllttfrqkpeTpksrgvLfaiydaqqnv
                                                  +T++++++Lf+++da +++
     sj00324     1 -------------------------------HTHQKTWYLFQVTDA-NGY 18   

                   rqlglevneVrDGrantlllryqkgsdGkvhtvaFrgEllpLaDgqWHkl
                   +q++levn    +++++l+lr q g+dG++ +++F+  +++L+D +WHkl
     sj00324    19 PQISLEVN----SQERSLELRAQ-GQDGDFVSCIFP--VPQLFDLRWHKL 61   

                   aLsVsgssRGapavtLyVDCnkidsrpdldrpdqglppidtdGievlgaq
                   +LsV g++     ++++VDC++++s+p l +++    p++++G+++lg++
     sj00324    62 MLSVAGRV-----ASVHVDCSSASSQP-LGPRR----PMRPVGHVFLGLD 101  

                   aaqdekkfqgdlQqlkivcdp<-*
                   a+q +k++++dlQq++i+cdp   
     sj00324   102 AEQ-GKPVSFDLQQVHIYCDP    121  

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