hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18130563/chunk_1/iprscan-20090618-18130563.nocrc
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Query sequence: sj00362
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       284.6    1.7e-82   7
PF00400.22.fs WD domain, G-beta repeat                       275.8    7.8e-80   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/8      81   119 ..     1    38 []    42.6  5.1e-11
PF00400.22.ls   1/7      81   119 ..     1    38 []    44.5  3.3e-10
PF00400.22.fs   2/8     123   161 ..     1    38 []    46.1    5e-12
PF00400.22.ls   2/7     123   161 ..     1    38 []    48.1  2.8e-11
PF00400.22.fs   3/8     165   203 ..     1    38 []    51.9  1.2e-13
PF00400.22.ls   3/7     165   203 ..     1    38 []    53.9    5e-13
PF00400.22.fs   4/8     207   245 ..     1    38 []    50.0  4.1e-13
PF00400.22.ls   4/7     207   245 ..     1    38 []    52.0  1.9e-12
PF00400.22.fs   5/8     249   288 ..     1    38 []    34.1  1.2e-08
PF00400.22.ls   5/7     249   288 ..     1    38 []    36.1  1.1e-07
PF00400.22.fs   6/8     292   333 ..     1    38 []    32.1  4.4e-08
PF00400.22.ls   6/7     292   333 ..     1    38 []    34.1  4.4e-07
PF00400.22.fs   7/8     337   365 ..     1    28 [.    15.7   0.0019

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 8, from 81 to 119: score 42.6, E = 5.1e-11
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +k +l gHt +V++v+fsp+ g++las+S+D+ i iW    
     sj00362    81    YALKcTLvGHTEAVSSVKFSPN-GEWLASSSADRLIIIWG    119  

PF00400.22.ls: domain 1 of 7, from 81 to 119: score 44.5, E = 3.3e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +k +l gHt +V++v+fsp+ g++las+S+D+ i iW    
     sj00362    81    YALKcTLvGHTEAVSSVKFSPN-GEWLASSSADRLIIIWG    119  

PF00400.22.fs: domain 2 of 8, from 123 to 161: score 46.1, E = 5e-12
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+  ++l+gH+  +++va+s d +++l+s+S+D+t+k+Wd   
     sj00362   123    GKYEkTLyGHNLEISDVAWSSD-SSRLVSASDDKTLKLWD    161  

PF00400.22.ls: domain 2 of 7, from 123 to 161: score 48.1, E = 2.8e-11
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+  ++l+gH+  +++va+s d +++l+s+S+D+t+k+Wd   
     sj00362   123    GKYEkTLyGHNLEISDVAWSSD-SSRLVSASDDKTLKLWD    161  

PF00400.22.fs: domain 3 of 8, from 165 to 203: score 51.9, E = 1.2e-13
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c+++l+gH++ V c+ f+p+ ++l++sgS D t+kiW+   
     sj00362   165    GKCLkTLkGHSNYVFCCNFNPP-SNLIISGSFDETVKIWE    203  

PF00400.22.ls: domain 3 of 7, from 165 to 203: score 53.9, E = 5e-13
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c+++l+gH++ V c+ f+p+ ++l++sgS D t+kiW+   
     sj00362   165    GKCLkTLkGHSNYVFCCNFNPP-SNLIISGSFDETVKIWE    203  

PF00400.22.fs: domain 4 of 8, from 207 to 245: score 50.0, E = 4.1e-13
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c+++l++H+++V++v f+ + g+l++sgS Dg ++iWd   
     sj00362   207    GKCLkTLsAHSDPVSAVHFNCS-GSLIVSGSYDGLCRIWD    245  

PF00400.22.ls: domain 4 of 7, from 207 to 245: score 52.0, E = 1.9e-12
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c+++l++H+++V++v f+ + g+l++sgS Dg ++iWd   
     sj00362   207    GKCLkTLsAHSDPVSAVHFNCS-GSLIVSGSYDGLCRIWD    245  

PF00400.22.fs: domain 5 of 8, from 249 to 288: score 34.1, E = 1.2e-08
                   *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c+++l ++ + +V+ v+fsp+ g++++++  D+t+k+Wd   
     sj00362   249    GQCLkTLvdDDNPPVSFVKFSPN-GKYILTATLDNTLKLWD    288  

PF00400.22.ls: domain 5 of 7, from 249 to 288: score 36.1, E = 1.1e-07
                   *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+c+++l ++ + +V+ v+fsp+ g++++++  D+t+k+Wd   
     sj00362   249    GQCLkTLvdDDNPPVSFVKFSPN-GKYILTATLDNTLKLWD    288  

PF00400.22.fs: domain 6 of 8, from 292 to 333: score 32.1, E = 4.4e-08
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                      g c+++++gH++  +c+  + + ++g++++sgS+D+ ++iW+   
     sj00362   292    GRCLkTYtGHKNEKYCIFANFSvtGGKWIVSGSEDNLVYIWN    333  

PF00400.22.ls: domain 6 of 7, from 292 to 333: score 34.1, E = 4.4e-07
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                      g c+++++gH++  +c+  + + ++g++++sgS+D+ ++iW+   
     sj00362   292    GRCLkTYtGHKNEKYCIFANFSvtGGKWIVSGSEDNLVYIWN    333  

PF00400.22.fs: domain 7 of 8, from 337 to 365: score 15.7, E = 0.0019
                   *->geck.vl.gHtstVtcvafspdsgpllasg<-*
                      +e ++ l+gHt+ V + a++p   +l+as+   
     sj00362   337    KEIVqKLqGHTDVVISAACHPT-ENLIASA    365  

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