hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18130563/chunk_1/iprscan-20090618-18130563.nocrc
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Query sequence: sj00362
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 307.4      1e-87   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      80   119 ..     1    46 []    45.4  7.7e-09
SM00320    2/7     122   161 ..     1    46 []    51.2  1.4e-10
SM00320    3/7     164   203 ..     1    46 []    53.9  2.1e-11
SM00320    4/7     206   245 ..     1    46 []    54.9    1e-11
SM00320    5/7     248   288 ..     1    46 []    40.7    2e-07
SM00320    6/7     291   333 ..     1    46 []    32.7  5.1e-05
SM00320    7/7     336   377 ..     1    46 []    28.7  0.00082

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 80 to 119: score 45.4, E = 7.7e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  l +tl gHt   +V+sv+fsp+g      ++las+s D+ i +W
     sj00362    80    NyALKCTLVGHTE--AVSSVKFSPNG------EWLASSSaDRLIIIW 118  

                   d<-*
                       
     sj00362   119 G    119  

SM00320: domain 2 of 7, from 122 to 161: score 51.2, E = 1.4e-10
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k  +tl gH+   ++++va+s+d+      ++l+s+s+D+t++lW
     sj00362   122    DgKYEKTLYGHNL--EISDVAWSSDS------SRLVSASdDKTLKLW 160  

                   d<-*
                   d   
     sj00362   161 D    161  

SM00320: domain 3 of 7, from 164 to 203: score 53.9, E = 2.1e-11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+l+tlkgH++  +V ++ f+p +      nl++sgs D t+++W
     sj00362   164    SgKCLKTLKGHSN--YVFCCNFNPPS------NLIISGSfDETVKIW 202  

                   d<-*
                   +   
     sj00362   203 E    203  

SM00320: domain 4 of 7, from 206 to 245: score 54.9, E = 1e-11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+k+l+tl++H++  pV++v f+ +g      +l++sgs Dg +r+W
     sj00362   206    TgKCLKTLSAHSD--PVSAVHFNCSG------SLIVSGSyDGLCRIW 244  

                   d<-*
                   d   
     sj00362   245 D    245  

SM00320: domain 5 of 7, from 248 to 288: score 40.7, E = 2e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++l+tl   ++  pV+ v+fsp+g      ++++++  D+t++lW
     sj00362   248    SgQCLKTLVDDDN-PPVSFVKFSPNG------KYILTATlDNTLKLW 287  

                   d<-*
                   d   
     sj00362   288 D    288  

SM00320: domain 6 of 7, from 291 to 333: score 32.7, E = 5.1e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +++l+t++gH++e+++    fs +g     +++++sgs+D+ +++W
     sj00362   291    RgRCLKTYTGHKNEKYCIFANFSVTG-----GKWIVSGSeDNLVYIW 332  

                   d<-*
                   +   
     sj00362   333 N    333  

SM00320: domain 7 of 7, from 336 to 377: score 28.7, E = 0.00082
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs...Dgtir
                      t++ +++l+gHt+   V s a +p+       nl+as+  ++D+ti+
     sj00362   336    TkEIVQKLQGHTD--VVISAACHPTE------NLIASAAlenDKTIK 374  

                   lWd<-*
                   lW    
     sj00362   375 LWM    377  

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