hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19051856/chunk_1/iprscan-20080813-19051856.nocrc
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Query sequence: sj00374
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01369.11.ls Sec7 domain                                    376.4   4.2e-110   1
PF01369.11.fs Sec7 domain                                    374.5   1.6e-109   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01369.11.fs   1/1       4   189 ..     1   221 []   374.5 1.6e-109
PF01369.11.ls   1/1       4   189 ..     1   221 []   376.4 4.2e-110

Alignments of top-scoring domains:
PF01369.11.fs: domain 1 of 1, from 4 to 189: score 374.5, E = 1.6e-109
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                        +r++  ++grkkFN++PkkGi++L ++ ll   ++p++iA fL+ 
     sj00374     4    TLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQ--NTPEEIARFLY- 47   

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   ++eGL+K+aiG++LGe+ + n++vL++Fv+ l++Ft+l+L++ALR+fL+s
     sj00374    48 KGEGLNKTAIGDYLGEREELNLAVLHAFVD-LHEFTDLNLVQALRQFLWS 96   

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   FRLPGEaQkIdR++eaF++rY+ c  Npgvf+++             D++
     sj00374    97 FRLPGEAQKIDRMMEAFAQRYCLC--NPGVFQST-------------DTC 131  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   yvLs+++IMLNT+LH Np+V++K   + le+F+++nr            g
     sj00374   132 YVLSFAVIMLNTSLH-NPNVRDK---PGLERFVAMNR------------G 165  

                   indGgDlprefLtelYesIkneei<-*
                   in+GgDlp+e+L++lY sI+ne++   
     sj00374   166 INEGGDLPEELLRNLYDSIRNEPF    189  

PF01369.11.ls: domain 1 of 1, from 4 to 189: score 376.4, E = 4.2e-110
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                        +r++  ++grkkFN++PkkGi++L ++ ll   ++p++iA fL+ 
     sj00374     4    TLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQ--NTPEEIARFLY- 47   

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                   ++eGL+K+aiG++LGe+ + n++vL++Fv+ l++Ft+l+L++ALR+fL+s
     sj00374    48 KGEGLNKTAIGDYLGEREELNLAVLHAFVD-LHEFTDLNLVQALRQFLWS 96   

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   FRLPGEaQkIdR++eaF++rY+ c  Npgvf+++             D++
     sj00374    97 FRLPGEAQKIDRMMEAFAQRYCLC--NPGVFQST-------------DTC 131  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   yvLs+++IMLNT+LH Np+V++K   + le+F+++nr            g
     sj00374   132 YVLSFAVIMLNTSLH-NPNVRDK---PGLERFVAMNR------------G 165  

                   indGgDlprefLtelYesIkneei<-*
                   in+GgDlp+e+L++lY sI+ne++   
     sj00374   166 INEGGDLPEELLRNLYDSIRNEPF    189  

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