hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19051856/chunk_1/iprscan-20080813-19051856.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: sj00374
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00222                                                 359.4   2.3e-103   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00222    1/1       4   189 ..     1   226 []   359.4 2.3e-103

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 4 to 189: score 359.4, E = 2.3e-103
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                        +r++++++g+kkfn++PkkGiqfL e+++l+    ++p+e+A+fl
     sj00374     4    TLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQ----NTPEEIARFL 46   

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          ++eglnk+aiGdyLge ++e n++vLhafvdl++F++++
     sj00374    47 Y----------KGEGLNKTAIGDYLGE-REELNLAVLHAFVDLHEFTDLN 85   

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   l++ALR+fL+sfrLPGEaQkIDR++eaF++rYc cNpgvf+         
     sj00374    86 LVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQ--------- 126  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       ++D++YvL++++IMLNT LHnpnv++        K+ +e+F+ ++r
     sj00374   127 ----STDTCYVLSFAVIMLNTSLHNPNVRD--------KPGLERFVAMNR 164  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   gin    +g+dlp+e+L++lYdsI+n+++   
     sj00374   165 GIN----EGGDLPEELLRNLYDSIRNEPF    189  

//