hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19105901/chunk_1/iprscan-20080813-19105901.nocrc
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Query sequence: sj00980
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00622.18.fs SPRY domain                                    122.6    1.4e-34   1
PF00622.18.ls SPRY domain                                    124.3    3.1e-34   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           26.4    6.3e-09   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           28.2    2.7e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00622.18.fs   1/1     133   254 ..     1   154 []   122.6  1.4e-34
PF00622.18.ls   1/1     133   254 ..     1   154 []   124.3  3.1e-34
PF00097.15.fs   1/1    1255  1292 ..     1    50 []    26.4  6.3e-09
PF00097.15.ls   1/1    1255  1292 ..     1    50 []    28.2  2.7e-05

Alignments of top-scoring domains:
PF00622.18.fs: domain 1 of 1, from 133 to 254: score 122.6, E = 1.4e-34
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      +Gk+ +EV ++  g     +++Gw+t s+            r++ e 
     sj00980   133    KGKWLYEVLISSQGL----MQIGWCTISC------------RFNQEE 163  

                   llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt
                   ++Gd ++s++ydg++ +k++  +    yg+ + + gd++ c++D+++g t
     sj00980   164 GVGDTHNSYAYDGNRVRKWNVTT--TNYGKAWAA-GDIVSCLIDLDDG-T 209  

                   isFtkNGkyLgdsEshiyaFrnvtfdk.kpggpLyPavslgsadgggeai
                   +sF +NG  Lg      +aF+n++ +++    +++Pa+sl+     +e++
     sj00980   210 LSFCLNGVSLG------TAFENLSRGLgM---AYFPAISLSF----KESV 246  

                   rlnfgqlp<-*
                    +nfg +p   
     sj00980   247 AFNFGSRP    254  

PF00622.18.ls: domain 1 of 1, from 133 to 254: score 124.3, E = 3.1e-34
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      +Gk+ +EV ++  g     +++Gw+t s+            r++ e 
     sj00980   133    KGKWLYEVLISSQGL----MQIGWCTISC------------RFNQEE 163  

                   llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt
                   ++Gd ++s++ydg++ +k++  +    yg+ + + gd++ c++D+++g t
     sj00980   164 GVGDTHNSYAYDGNRVRKWNVTT--TNYGKAWAA-GDIVSCLIDLDDG-T 209  

                   isFtkNGkyLgdsEshiyaFrnvtfdk.kpggpLyPavslgsadgggeai
                   +sF +NG  Lg      +aF+n++ +++    +++Pa+sl+     +e++
     sj00980   210 LSFCLNGVSLG------TAFENLSRGLgM---AYFPAISLSF----KESV 246  

                   rlnfgqlp<-*
                    +nfg +p   
     sj00980   247 AFNFGSRP    254  

PF00097.15.fs: domain 1 of 1, from 1255 to 1292: score 26.4, E = 6.3e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+IC   ++ ++     + pCgH+      C++C+ ++l   +n+ C
     sj00980  1255    CPICYAHPISAV-----FQPCGHK-----SCKACINQHLM--NNKDC 1289 

                   plC<-*
                    +C   
     sj00980  1290 FFC    1292 

PF00097.15.ls: domain 1 of 1, from 1255 to 1292: score 28.2, E = 2.7e-05
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C+IC   ++ ++     + pCgH+      C++C+ ++l   +n+ C
     sj00980  1255    CPICYAHPISAV-----FQPCGHK-----SCKACINQHLM--NNKDC 1289 

                   plC<-*
                    +C   
     sj00980  1290 FFC    1292 

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