hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19105901/chunk_1/iprscan-20080813-19105901.nocrc
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Query sequence: sj00980
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00449                                                 111.2    1.1e-28   1
SM00184                                                  28.9    0.00071   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00449    1/1     133   254 ..     1   145 []   111.2  1.1e-28
SM00184    1/1    1255  1292 ..     1    23 []    28.9  0.00071

Alignments of top-scoring domains:
SM00449: domain 1 of 1, from 133 to 254: score 111.2, E = 1.1e-28
                   *->sGkhYfEVevdtggdkghwrvGvatksvhlypfkvrrkrkggvsllG
                      +Gk+ +EV + + g    + +G++t s+ +            ++++G
     sj00980   133    KGKWLYEVLISSQGL---MQIGWCTISCRF----------NQEEGVG 166  

                   edkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcflDleaggStis
                   + + S++y+g++  + +++++  +yg+ +   gD++ c++Dl++g  t+s
     sj00980   167 DTHNSYAYDGNR-VRKWNVTT-TNYGKAWAA-GDIVSCLIDLDDG--TLS 211  

                   FykNGkyLgdshilaffdvtfs..gpLyPavslgstdgGgesvrlnfGp.
                   F  NG +Lg    +af++++ + + +++Pa+sl+     +esv +nfG +
     sj00980   212 FCLNGVSLG----TAFENLSRGlgMAYFPAISLSF----KESVAFNFGSr 253  

                   p<-*
                   p   
     sj00980   254 P    254  

SM00184: domain 1 of 1, from 1255 to 1292: score 28.9, E = 0.00071
                   *->CpICle....pvvlpCgH.FCr.Ci.........CPlC<-*
                      CpIC+ ++ ++v+ pCgH+ C+ Ci+++  ++++C +C   
     sj00980  1255    CPICYAhpisAVFQPCGHkSCKaCInqhlmnnkdCFFC    1292 

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