hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-16442899/chunk_1/iprscan-20090618-16442899.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: sj01179
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00615.9.ls Regulator of G protein signaling domain        211.3      2e-60   1
PF00615.9.fs Regulator of G protein signaling domain        209.5    7.2e-60   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00615.9.fs   1/1     421   537 ..     1   143 []   209.5  7.2e-60
PF00615.9.ls   1/1     421   537 ..     1   143 []   211.3    2e-60

Alignments of top-scoring domains:
PF00615.9.fs: domain 1 of 1, from 421 to 537: score 209.5, E = 7.2e-60
                   *->sfeklldkqpiGrllFreFLktefsepkenieFwlaveEyektespa
                      s+ekll  +++G+++F++FL+tefse  en+eFwla+e+++k +s+ 
     sj01179   421    SLEKLL-VHKYGLAVFQAFLRTEFSE--ENLEFWLACEDFKKVKSQ- 463  

                   ekrpdkaredevlAaAyGIydeFispeapkfevnldsevvestqqnlkea
                   +k+ +ka++         I++e+i+++a+k evnlds+++e+t++nl++ 
     sj01179   464 SKMASKAKK---------IFAEYIAIQACK-EVNLDSYTREHTKDNLQS- 502  

                   vevddllkdlqptkdlFeeaqreiytlmrgDsfprFLeSdyflrfL<-*
                              +t+++F+ aq++i+ lm++Ds+prFL+Sd +l+++   
     sj01179   503 -----------VTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI    537  

PF00615.9.ls: domain 1 of 1, from 421 to 537: score 211.3, E = 2e-60
                   *->sfeklldkqpiGrllFreFLktefsepkenieFwlaveEyektespa
                      s+ekll  +++G+++F++FL+tefse  en+eFwla+e+++k +s+ 
     sj01179   421    SLEKLL-VHKYGLAVFQAFLRTEFSE--ENLEFWLACEDFKKVKSQ- 463  

                   ekrpdkaredevlAaAyGIydeFispeapkfevnldsevvestqqnlkea
                   +k+ +ka++         I++e+i+++a+k evnlds+++e+t++nl++ 
     sj01179   464 SKMASKAKK---------IFAEYIAIQACK-EVNLDSYTREHTKDNLQS- 502  

                   vevddllkdlqptkdlFeeaqreiytlmrgDsfprFLeSdyflrfL<-*
                              +t+++F+ aq++i+ lm++Ds+prFL+Sd +l+++   
     sj01179   503 -----------VTRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI    537  

//