hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19222194/chunk_1/iprscan-20080813-19222194.nocrc
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Query sequence: sj01762
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
SM00038                                                 548.8   2.2e-160   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
SM00038         1/1    1135  1369 .]     1   240 []   548.8 2.2e-160

Alignments of top-scoring domains:
SM00038: domain 1 of 1, from 1135 to 1369: score 548.8, E = 2.2e-160
                   *->deeifasLkslnnLHKqIEqlksPtGskdnPARtCkDLkLcHpelkd
                      d+e++a+Lkslnn   qIE+l++P+Gs++nPARtC+DL+L+Hpe+++
     sj01762  1135    DYEVDATLKSLNN---QIETLLTPEGSRKNPARTCRDLRLSHPEWSS 1178 

                   GeYWvDPNqGCirDAikVfCnfetGvgeTCvspspssiprktWysgkskd
                   G+YW+DPNqGC++DAikV+C+f t  geTC+ + p+ ip+k+Wy++   d
     sj01762  1179 GYYWIDPNQGCTMDAIKVYCDFST--GETCIRAQPENIPAKNWYRSSK-D 1225 

                   kkhvWFgetmngGfkFsYgdsegsp.vgvvQLTFLRLLSteAsQniTYhC
                   kkhvW get+n G++F+Y+ + ++ + +++QL+F+RLL++ AsQniTYhC
     sj01762  1226 KKHVWLGETINAGSQFEYNVEGVTSkEMATQLAFMRLLANYASQNITYHC 1275 

                   KNSvAYmDeatGNlkkAlilrgsnDvElsaegnskftYeVLeDGCqkrtg
                   KNS+AYmDe+tGNlkkA+il+gsnDvEl+aegns+ftY+VL+DGC+k+t+
     sj01762  1276 KNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTN 1325 

                   kwgKTViEyrTkkteRLPIvDiAPsDIGGadQeFGveiGPVCFs<-*
                   +wgKT+iEy+T+k++RLP +DiAP+DIGGadQeF v+iGPVCF+   
     sj01762  1326 EWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK    1369 

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