hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19282703/chunk_1/iprscan-20080813-19282703.nocrc
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Query sequence: sj01773
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00446                                                  27.8     0.0015   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00446    1/1     140   158 ..     1    19 []    27.8   0.0015

Alignments of top-scoring domains:
SM00446: domain 1 of 1, from 140 to 158: score 27.8, E = 0.0015
                   *->laqYRekVirlLPqLrqLD<-*
                      +++YR++V+r+LP+L++LD   
     sj01773   140    PHRYRMTVLRTLPRLQKLD    158  

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