hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-18144336/chunk_1/iprscan-20090525-18144336.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj03005 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07714.7.ls Protein tyrosine kinase 482.0 6.5e-142 1 PF07714.7.fs Protein tyrosine kinase 480.2 2.4e-141 1 PF00069.15.ls Protein kinase domain 152.7 8.9e-43 1 PF00069.15.fs Protein kinase domain 150.8 9.7e-43 1 PF00017.14.fs SH2 domain 110.5 2.5e-37 1 PF00017.14.ls SH2 domain 112.5 1.2e-30 1 PF00779.9.ls BTK motif 87.7 3.3e-23 1 PF00779.9.fs BTK motif 85.7 1.3e-22 1 PF00018.18.ls SH3 domain 79.2 1.2e-20 1 PF00018.18.fs SH3 domain 77.3 2.3e-20 1 PF00169.19.fs PH domain 65.9 1.3e-19 1 PF00169.19.ls PH domain 67.9 2.9e-17 1 PF07653.7.fs Variant SH3 domain 36.9 5.5e-10 1 PF07653.7.ls Variant SH3 domain 38.7 1.9e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.ls 1/1 44 150 .. 1 92 [] 67.9 2.9e-17 PF00169.19.fs 1/1 44 150 .. 1 92 [] 65.9 1.3e-19 PF00779.9.fs 1/1 152 188 .. 1 37 [] 85.7 1.3e-22 PF00779.9.ls 1/1 152 188 .. 1 37 [] 87.7 3.3e-23 PF00018.18.fs 1/1 213 268 .. 1 59 [] 77.3 2.3e-20 PF00018.18.ls 1/1 213 268 .. 1 59 [] 79.2 1.2e-20 PF07653.7.ls 1/1 214 268 .. 1 69 [] 38.7 1.9e-08 PF07653.7.fs 1/1 214 268 .. 1 69 [] 36.9 5.5e-10 PF00017.14.fs 1/1 278 362 .. 1 82 [] 110.5 2.5e-37 PF00017.14.ls 1/1 278 362 .. 1 82 [] 112.5 1.2e-30 PF00069.15.fs 1/1 402 651 .. 1 287 [] 150.8 9.7e-43 PF07714.7.fs 1/1 402 651 .. 1 272 [] 480.2 2.4e-141 PF07714.7.ls 1/1 402 651 .. 1 272 [] 482.0 6.5e-142 PF00069.15.ls 1/1 402 651 .. 1 287 [] 152.7 8.9e-43 Alignments of top-scoring domains: PF00169.19.ls: domain 1 of 1, from 44 to 150: score 67.9, E = 2.9e-17 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk...kkp + e L kk++++++++ +++k R+fvL+ +L y++d+++++ ++ sj03005 44 ILLEEQLIKKSqqkrrtSPSNFKVRFFVLTKASLAYFEDRHgkkRTL 90 kgsipLsgiqvtkvpdn......krkncFeirt.dretlllqaeseeerk kgsi Ls i+++++++++ + + k+ F++++++ l+++a++ e+r+ sj03005 91 KGSIELSRIKCVEIVKSdisipcHYKYPFQVVHdNY-LLYVFAPDRESRQ 139 eWvkaiqsair<-* +Wv a+++ r sj03005 140 RWVLALKEETR 150 PF00169.19.fs: domain 1 of 1, from 44 to 150: score 65.9, E = 1.3e-19 *->vikeGwLlkkg......gkkswkkRyfvLfddvLlyykdkk...kkp + e L kk++++++++ +++k R+fvL+ +L y++d+++++ ++ sj03005 44 ILLEEQLIKKSqqkrrtSPSNFKVRFFVLTKASLAYFEDRHgkkRTL 90 kgsipLsgiqvtkvpdn......krkncFeirt.dretlllqaeseeerk kgsi Ls i+++++++++ + + k+ F++++++ l+++a++ e+r+ sj03005 91 KGSIELSRIKCVEIVKSdisipcHYKYPFQVVHdNY-LLYVFAPDRESRQ 139 eWvkaiqsair<-* +Wv a+++ r sj03005 140 RWVLALKEETR 150 PF00779.9.fs: domain 1 of 1, from 152 to 188: score 85.7, E = 1.3e-22 *->NnnllqkYHPsfwvdGkwlCCqqteKnApGCkkveag<-* Nn+l++kYHP+fw+dGkw+CC+q eK+A+GC++++++ sj03005 152 NNSLVPKYHPNFWMDGKWRCCSQLEKLATGCAQYDPT 188 PF00779.9.ls: domain 1 of 1, from 152 to 188: score 87.7, E = 3.3e-23 *->NnnllqkYHPsfwvdGkwlCCqqteKnApGCkkveag<-* Nn+l++kYHP+fw+dGkw+CC+q eK+A+GC++++++ sj03005 152 NNSLVPKYHPNFWMDGKWRCCSQLEKLATGCAQYDPT 188 PF00018.18.fs: domain 1 of 1, from 213 to 268: score 77.3, E = 2.3e-20 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++v+ALYDY+ ++++EL +++++++ +l+ s+ +WW++++ + G+ sj03005 213 TVVIALYDYQTNDPQELALRRNEEYCLLDSSEI-HWWRVQDRN--GH 256 eGliPsNYVepv<-* eG++Ps+Y+ ++ sj03005 257 EGYVPSSYLVEK 268 PF00018.18.ls: domain 1 of 1, from 213 to 268: score 79.2, E = 1.2e-20 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++v+ALYDY+ ++++EL +++++++ +l+ s+ +WW++++ + G+ sj03005 213 TVVIALYDYQTNDPQELALRRNEEYCLLDSSEI-HWWRVQDRN--GH 256 eGliPsNYVepv<-* eG++Ps+Y+ ++ sj03005 257 EGYVPSSYLVEK 268 PF07653.7.ls: domain 1 of 1, from 214 to 268: score 38.7, E = 1.9e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++a+ dy +d++e L+l++++ +++ + + ++ww+ sj03005 214 VVIALYDYQT-NDPQE------LALRRNEEYCLL----DSSEIHWWR 249 g.eslggGrrrRGlvPssaveel<-* ++++ +G++ G+vPss++ e sj03005 250 VqDR--NGHE--GYVPSSYLVEK 268 PF07653.7.fs: domain 1 of 1, from 214 to 268: score 36.9, E = 5.5e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe +++a+ dy +d++e L+l++++ +++ + + ++ww+ sj03005 214 VVIALYDYQT-NDPQE------LALRRNEEYCLL----DSSEIHWWR 249 g.eslggGrrrRGlvPssaveel<-* ++++ +G++ G+vPss++ e sj03005 250 VqDR--NGHE--GYVPSSYLVEK 268 PF00017.14.fs: domain 1 of 1, from 278 to 362: score 110.5, E = 2.5e-37 *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgp. Wy ++IsR +AE+lLl +gk+G+F+vR+S+ t G Yt+SV+++ sj03005 278 WYNKSISRDKAEKLLLD-TGKEGAFMVRDSR-TAGTYTVSVFTKAVv 322 ..qgdrVkHyrIqsldng..gyyitggvkFssLpeLvehY<-* +++++ +kHy+I+++++ ++ yy++++ F+s+p L++++ sj03005 323 seNNPCIKHYHIKETNDNpkRYYVAEKYVFDSIPLLINYH 362 PF00017.14.ls: domain 1 of 1, from 278 to 362: score 112.5, E = 1.2e-30 *->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgp. Wy ++IsR +AE+lLl +gk+G+F+vR+S+ t G Yt+SV+++ sj03005 278 WYNKSISRDKAEKLLLD-TGKEGAFMVRDSR-TAGTYTVSVFTKAVv 322 ..qgdrVkHyrIqsldng..gyyitggvkFssLpeLvehY<-* +++++ +kHy+I+++++ ++ yy++++ F+s+p L++++ sj03005 323 seNNPCIKHYHIKETNDNpkRYYVAEKYVFDSIPLLINYH 362 PF00069.15.fs: domain 1 of 1, from 402 to 651: score 150.8, E = 9.7e-43 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +++++ +GsG fG V ++++ + k VA+K+i+ +++ ++ sj03005 402 LTFVQEIGSGQFGLVHLGYWLNKDK-VAIKTIREGAMSEEDFIE--- 444 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E++++ +LsHp v+l++v+ + ++lV+E++e+G L+dyl+ sj03005 445 --EAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHG----CLSDYLR- 487 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv ++g + +++ ++l +++g++YL + +iHRDL N+L+ +n v sj03005 488 -TQRGLF--AAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQV 534 vdaflKiaDFGlAkklst.sss.lttfvGTpw...YmAPEvllggngygt + K++DFG + + ++t+ +GT ++ ++++PEv + y++ sj03005 535 I----KVSDFGMTR---FvLDDqYTSSTGTKFpvkWASPEVFS-FSRYSS 576 kvDvWSlGvilyellt.GkpPFsgevqdsldqlqlirkilgpplefdspe k+DvWS+Gv+++e++++Gk P+ ++ + ++++ ++ ++ p sj03005 577 KSDVWSFGVLMWEVFSeGKIPYENR------SNSEVVEDISTGFRLYKPR 620 wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* s ++++ c++ P++R+ + +l + sj03005 621 LAS-------------THVYQIMNHCWKERPEDRPAFSRLLRQ--L 651 PF07714.7.fs: domain 1 of 1, from 402 to 651: score 480.2, E = 2.4e-141 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie l++ +++G+G+FG V++G++ ++ kVA+Kt++e ga++e sj03005 402 LTFVQEIGSGQFGLVHLGYWL-----NKDKVAIKTIRE-GAMSE--- 439 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL edF++EA++M+kl +Hp++V+L+Gvc++ + P +++V+E+me+G+L sj03005 440 -EDFIEEAEVMMKL-SHPKLVQLYGVCLE-QAP----ICLVFEFMEHGCL 482 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs d+Lr++ ++ + ++Ll+++l++++GM+YLe+ +HRDLAARNcLV+ sj03005 483 SDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 530 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS en v+K+sDFG++R + dd Y ++++g+k+PvkW +PE++++++++skS sj03005 531 ENQVIKVSDFGMTRFV-LDDQY-TSSTGTKFPVKWASPEVFSFSRYSSKS 578 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVWSFGVl+WE+f+ G++P Y++ sn+ev+e + G RL +P++++ + sj03005 579 DVWSFGVLMWEVFSEGKIP-YENRSNSEVVEDI-STGFRLYKPRLASTHV 626 YdlMlqCWaedPedRPtFselveeL<-* Y++M +CW+e PedRP Fs l+++L sj03005 627 YQIMNHCWKERPEDRPAFSRLLRQL 651 PF07714.7.ls: domain 1 of 1, from 402 to 651: score 482.0, E = 6.5e-142 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtLkeigaseeeie l++ +++G+G+FG V++G++ ++ kVA+Kt++e ga++e sj03005 402 LTFVQEIGSGQFGLVHLGYWL-----NKDKVAIKTIRE-GAMSE--- 439 redFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGdL edF++EA++M+kl +Hp++V+L+Gvc++ + P +++V+E+me+G+L sj03005 440 -EDFIEEAEVMMKL-SHPKLVQLYGVCLE-QAP----ICLVFEFMEHGCL 482 ldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcLVs d+Lr++ ++ + ++Ll+++l++++GM+YLe+ +HRDLAARNcLV+ sj03005 483 SDYLRTQ--RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVG 530 enlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkygkFtskS en v+K+sDFG++R + dd Y ++++g+k+PvkW +PE++++++++skS sj03005 531 ENQVIKVSDFGMTRFV-LDDQY-TSSTGTKFPVKWASPEVFSFSRYSSKS 578 DVWSFGVlLWEiftlGeqPFYpgmsneevlellyedGyRLprPenCPdel DVWSFGVl+WE+f+ G++P Y++ sn+ev+e + G RL +P++++ + sj03005 579 DVWSFGVLMWEVFSEGKIP-YENRSNSEVVEDI-STGFRLYKPRLASTHV 626 YdlMlqCWaedPedRPtFselveeL<-* Y++M +CW+e PedRP Fs l+++L sj03005 627 YQIMNHCWKERPEDRPAFSRLLRQL 651 PF00069.15.ls: domain 1 of 1, from 402 to 651: score 152.7, E = 8.9e-43 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +++++ +GsG fG V ++++ + k VA+K+i+ +++ ++ sj03005 402 LTFVQEIGSGQFGLVHLGYWLNKDK-VAIKTIREGAMSEEDFIE--- 444 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse E++++ +LsHp v+l++v+ + ++lV+E++e+G L+dyl+ sj03005 445 --EAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHG----CLSDYLR- 487 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv ++g + +++ ++l +++g++YL + +iHRDL N+L+ +n v sj03005 488 -TQRGLF--AAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQV 534 vdaflKiaDFGlAkklst.sss.lttfvGTpw...YmAPEvllggngygt + K++DFG + + ++t+ +GT ++ ++++PEv + y++ sj03005 535 I----KVSDFGMTR---FvLDDqYTSSTGTKFpvkWASPEVFS-FSRYSS 576 kvDvWSlGvilyellt.GkpPFsgevqdsldqlqlirkilgpplefdspe k+DvWS+Gv+++e++++Gk P+ ++ + ++++ ++ ++ p sj03005 577 KSDVWSFGVLMWEVFSeGKIPYENR------SNSEVVEDISTGFRLYKPR 620 wdsisrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* s ++++ c++ P++R+ + +l + sj03005 621 LAS-------------THVYQIMNHCWKERPEDRPAFSRLLRQ--L 651 //