hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-18144336/chunk_1/iprscan-20090525-18144336.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: sj03005
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
SM00219                                                 455.4   2.8e-132   1
SM00220                                                 185.1    6.8e-51   1
SM00252                                                 112.8    3.8e-29   1
SM00107                                                  80.9    1.5e-19   1
SM00326                                                  66.9    2.5e-15   1
SM00233                                                  63.3    3.1e-14   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
SM00233          1/1      44   152 ..     1    82 []    63.3  3.1e-14
SM00107          1/1     152   188 ..     1    37 []    80.9  1.5e-19
SM00326          1/1     213   269 ..     1    58 []    66.9  2.5e-15
SM00252          1/1     276   368 ..     1    87 []   112.8  3.8e-29
SM00219          1/1     402   651 ..     1   280 []   455.4 2.8e-132
SM00220          1/1     402   652 ..     1   231 []   185.1  6.8e-51

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 44 to 152: score 63.3, E = 3.1e-14
                   *->vikeGwLlkks.......k.swkkryfvLfngvLlyyksk.....kp
                      +++e +L kks+++++++ +++k r+fvL+  +L y+++++++++++
     sj03005    44    ILLEEQLIKKSqqkrrtsPsNFKVRFFVLTKASLAYFEDRhgkkrTL 90   

                   kgsipLsgcsvre.p............cFeivt.drtlllqAeseeeree
                   kgsi Ls ++++e ++++ + + + +  F++v+++  l+++A++ e+r++
     sj03005    91 KGSIELSRIKCVEiVksdisipchykyPFQVVHdNYLLYVFAPDRESRQR 140  

                   Wvealqsaiaka<-*
                   Wv al++ ++++   
     sj03005   141 WVLALKEETRNN    152  

SM00107: domain 1 of 1, from 152 to 188: score 80.9, E = 1.5e-19
                   *->NnnllqkYHPsFwvdGkwlCCqqseKnApGCkpyeag<-*
                      Nn+l+ kYHP+Fw+dGkw+CC+q eK+A+GC+ y++    
     sj03005   152    NNSLVPKYHPNFWMDGKWRCCSQLEKLATGCAQYDPT    188  

SM00326: domain 1 of 1, from 213 to 269: score 66.9, E = 2.5e-15
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       +v+AlYDy+  +++EL +++++ + +l+ s+ +Ww+++ + +G eG
     sj03005   213    TVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDR-NGHEG 258  

                   lfPsnYVeeie<-*
                   ++Ps+Y+ e+    
     sj03005   259 YVPSSYLVEKS    269  

SM00252: domain 1 of 1, from 276 to 368: score 112.8, E = 3.8e-29
                   *->epWYHGkisReeAEklLkneggpdGtFLvRdSesspgdyvLSvrvk.
                      ++WY   isR++AEklL+   g++G+F+vRdS++ +g y++Sv++k 
     sj03005   276    YEWYNKSISRDKAEKLLLDT-GKEGAFMVRDSRT-AGTYTVSVFTKa 320  

                   ......gkvkHyrIrrtdd..gkfylggtprrkFpsL.eLvehYqknslg
                     ++++ ++kHy+I++t+d+++++y+++  ++ F+s++ L++++q+n +g
     sj03005   321 vvsennPCIKHYHIKETNDnpKRYYVAE--KYVFDSIpLLINYHQHNGGG 368  

                   <-*
                      
     sj03005     -     -    

SM00219: domain 1 of 1, from 402 to 651: score 455.4, E = 2.8e-132
                   *->ltlgkkLGeGaFGeVykGtlk..ieVAVKtLkeda..keeFlrEaki
                      lt+ +++G+G+FG V++G + ++ +VA+Kt++e+a ++e+F++Ea++
     sj03005   402    LTFVQEIGSGQFGLVHLGYWLnkDKVAIKTIREGAmsEEDFIEEAEV 448  

                   MkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyLrkn
                   M+kl  +Hp +V+L+Gvc+e+        P+++v+E+me+G+L dyLr  
     sj03005   449 MMKL--SHPKLVQLYGVCLEQ-------APICLVFEFMEHGCLSDYLRTQ 489  

                   rpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkvvKIsD
                   r+ +  ++Ll ++l++++GM+YLe+ +++HRDLAARNcLvgen+v+K+sD
     sj03005   490 RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSD 539  

                   FGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdgkFtsk
                   FG++R++ dd         Y++++  g+k  +P++W +PE++ +++++sk
     sj03005   540 FGMTRFVLDD--------QYTSST--GTK--FPVKWASPEVFSFSRYSSK 577  

                   SDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlpkPend
                   SDVWSFGVl+WE+f+ G+ PY++      sn+ev+e++ +G+Rl kP   
     sj03005   578 SDVWSFGVLMWEVFSEGKIPYEN-----RSNSEVVEDISTGFRLYKPRL- 621  

                   lpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                          +++ +Y++M  CW+e PedRP Fs l ++l   
     sj03005   622 -------ASTHVYQIMNHCWKERPEDRPAFSRLLRQL    651  

SM00220: domain 1 of 1, from 402 to 652: score 185.1, E = 6.8e-51
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik......erilrEik
                       ++++++G+G FG V+l+++ + + +vAiK i+++  ++e+++ E +
     sj03005   402    LTFVQEIGSGQFGLVHLGYWLN-KDKVAIKTIRegamseEDFIEEAE 447  

                   iLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrglr
                   +++k  HP +V+Ly+v+ ++  ++lV+E++e+  G L d+l+ +++    
     sj03005   448 VMMKlSHPKLVQLYGVCLEqAPICLVFEFMEH--GCLSDYLRTQRGL--- 492  

                   kvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvKlaDF
                     +  ++   ++  ++++++YL +  +iHRDL   N L+ +++++K++DF
     sj03005   493 --FAAeTLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGEnqVIKVSDF 540  

                   GlArql.....ttfvGTpe...YmAPEvl...gYgkpavDiWSlGcilyE
                   G+ r++ +++ t+  GT ++ ++ +PEv++ + Y+  ++D+WS+G++++E
     sj03005   541 GMTRFVlddqyTSSTGTKFpvkWASPEVFsfsRYSS-KSDVWSFGVLMWE 589  

                   llt.GkpPFp..qldlifkkig...........SpeakdLikklLvkdPe
                    +++Gk P++++   ++ + i ++ + ++++  S  + ++++++++  Pe
     sj03005   590 VFSeGKIPYEnrSNSEVVEDIStgfrlykprlaSTHVYQIMNHCWKERPE 639  

                   kRlta.eaLedeldikaHPff<-*
                   +R+  + +L+        +     
     sj03005   640 DRPAFsRLLR--------QLA    652  

//