hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-19390193/chunk_1/iprscan-20080813-19390193.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj03130 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08441.2.fs Integrin alpha 494.3 9.3e-150 1 PF08441.2.ls Integrin alpha 496.0 4e-146 1 PF01839.13.fs FG-GAP repeat 74.9 5.5e-21 4 PF01839.13.ls FG-GAP repeat 77.0 5.4e-20 3 PF00357.10.fs Integrin alpha cytoplasmic region 21.5 2.4e-06 1 PF00357.10.ls Integrin alpha cytoplasmic region 23.4 0.00073 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01839.13.fs 2/4 128 164 .. 1 36 [] 32.3 1.6e-08 PF01839.13.ls 1/3 128 164 .. 1 36 [] 34.3 3.9e-07 PF01839.13.ls 2/3 191 225 .. 1 36 [] 30.8 4.4e-06 PF01839.13.fs 3/4 191 225 .. 1 36 [] 28.9 1.5e-07 PF08441.2.ls 1/1 285 724 .. 1 483 [] 496.0 4e-146 PF08441.2.fs 1/1 285 724 .. 1 483 [] 494.3 9.3e-150 PF00357.10.fs 1/1 823 837 .. 1 15 [] 21.5 2.4e-06 PF00357.10.ls 1/1 823 837 .. 1 15 [] 23.4 0.00073 Alignments of top-scoring domains: PF01839.13.fs: domain 2 of 4, from 128 to 164: score 32.3, E = 1.6e-08 *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-* fg+sv+a+Dln DG++Dl+vgaP+ + ++++g+v+++ sj03130 128 FGASVCAVDLNADGFSDLLVGAPMQSTIReEGRVFVY 164 PF01839.13.ls: domain 1 of 3, from 128 to 164: score 34.3, E = 3.9e-07 *->fgssvaagDlnGDGrpDlvvgaPgadggt.dgsvyll<-* fg+sv+a+Dln DG++Dl+vgaP+ + ++++g+v+++ sj03130 128 FGASVCAVDLNADGFSDLLVGAPMQSTIReEGRVFVY 164 PF01839.13.ls: domain 2 of 3, from 191 to 225: score 30.8, E = 4.4e-06 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* + s v +gD+++DG++D+++gaP +d +g++y++ sj03130 191 GESIVNLGDIDNDGFEDVAIGAP----QEdDlqGAIYIY 225 PF01839.13.fs: domain 3 of 4, from 191 to 225: score 28.9, E = 1.5e-07 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* + s v +gD+++DG++D+++gaP +d +g++y++ sj03130 191 GESIVNLGDIDNDGFEDVAIGAP----QEdDlqGAIYIY 225 PF08441.2.ls: domain 1 of 1, from 285 to 724: score 496.0, E = 4e-146 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg +RPVv v+asls P+++n++k++C+++g+ p +C+++t+Cf+++g sj03130 285 TRPVVIVDASLSH-PESVNRTKFDCVENGW--PSVCIDLTLCFSYKG 328 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetk.sstltrnlvl k v p++ivl y++ LD+ ++k ++R++F ++++s +t+++ + sj03130 329 KEV----PGYIVLFYNMSLDV-NRKAESPPRFYFS-SNGtSDVITGSIQV 372 gnqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlp ++ +++C+t+++++r+ +vrD+l+PI i++ y+L+++ ++r++ ++p sj03130 373 SSR-EANCRTHQAFMRK--DVRDILTPIQIEAAYHLGPHVISKRSTEEFP 419 gllqPvLnqysp.tsitfqipFeKnCGeDniCvaDLqLsvsfslre...g +l qP+L+q+++++ + + i+F + C+++n C aDLq+s++ + +++++ sj03130 420 PL-QPILQQKKEkDIMKKTINFARFCAHEN-CSADLQVSAKIGFLKpheN 467 tptLvvGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnp + +L+vG++k+L+L++++ N G+dAYe++L+v +P gL+f+k+ + sj03130 468 KTYLAVGSMKTLMLNVSLFNA-GDDAYETTLHVKLPVGLYFIKI----LE 512 esekplsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgd +ek+++Ce++++ g+++++C++G+ + + s++ +++++dvssls +++ sj03130 513 LEEKQINCEVTDNSGVVQLDCSIGYIYVDHLSRIDISFLLDVSSLSRAEE 562 slefdlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffn +l+++++at++Nee+++nl++ +vt+ ip+kye+ l+++G ++p++++++ sj03130 563 DLSITVHATCENEEEMDNLKHSRVTVAIPLKYEVKLTVHGFVNPTSFVYG 612 gsnwegesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPye ++ +++e e+++ +++ t++v+N+G+s +pn+s++i++P++ sj03130 613 SN-----DENEPETCMV---EKMNLTFHVINTGNS-MAPNVSVEIMVPNS 653 lasdsngkvpllYllevqtgsksegnvsCspqnlninplnldlsssgttp ++ ++ + l+++l+vqt + ++C+++n ++++ l++++s ++ sj03130 654 FS--PQTD-KLFNILDVQT-----TTGECHFENY-QRVCALEQQKSAMQT 694 rleallrnsrerqeigesevaqsykvLdCsssnasClrirC<-* + ++++ s ++ ++L+C++ +Cl++ C sj03130 695 LKGIVQFLSKTDK-----------RLLYCIKADPHCLNFLC 724 PF08441.2.fs: domain 1 of 1, from 285 to 724: score 494.3, E = 9.3e-150 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg +RPVv v+asls P+++n++k++C+++g+ p +C+++t+Cf+++g sj03130 285 TRPVVIVDASLSH-PESVNRTKFDCVENGW--PSVCIDLTLCFSYKG 328 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetk.sstltrnlvl k v p++ivl y++ LD+ ++k ++R++F ++++s +t+++ + sj03130 329 KEV----PGYIVLFYNMSLDV-NRKAESPPRFYFS-SNGtSDVITGSIQV 372 gnqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlp ++ +++C+t+++++r+ +vrD+l+PI i++ y+L+++ ++r++ ++p sj03130 373 SSR-EANCRTHQAFMRK--DVRDILTPIQIEAAYHLGPHVISKRSTEEFP 419 gllqPvLnqysp.tsitfqipFeKnCGeDniCvaDLqLsvsfslre...g +l qP+L+q+++++ + + i+F + C+++n C aDLq+s++ + +++++ sj03130 420 PL-QPILQQKKEkDIMKKTINFARFCAHEN-CSADLQVSAKIGFLKpheN 467 tptLvvGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverlqnp + +L+vG++k+L+L++++ N G+dAYe++L+v +P gL+f+k+ + sj03130 468 KTYLAVGSMKTLMLNVSLFNA-GDDAYETTLHVKLPVGLYFIKI----LE 512 esekplsCesnkengtrsvtCdlGnPimkagsqvtftitFdvsslsglgd +ek+++Ce++++ g+++++C++G+ + + s++ +++++dvssls +++ sj03130 513 LEEKQINCEVTDNSGVVQLDCSIGYIYVDHLSRIDISFLLDVSSLSRAEE 562 slefdlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffn +l+++++at++Nee+++nl++ +vt+ ip+kye+ l+++G ++p++++++ sj03130 563 DLSITVHATCENEEEMDNLKHSRVTVAIPLKYEVKLTVHGFVNPTSFVYG 612 gsnwegesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPye ++ +++e e+++ +++ t++v+N+G+s +pn+s++i++P++ sj03130 613 SN-----DENEPETCMV---EKMNLTFHVINTGNS-MAPNVSVEIMVPNS 653 lasdsngkvpllYllevqtgsksegnvsCspqnlninplnldlsssgttp ++ ++ + l+++l+vqt + ++C+++n ++++ l++++s ++ sj03130 654 FS--PQTD-KLFNILDVQT-----TTGECHFENY-QRVCALEQQKSAMQT 694 rleallrnsrerqeigesevaqsykvLdCsssnasClrirC<-* + ++++ s ++ ++L+C++ +Cl++ C sj03130 695 LKGIVQFLSKTDK-----------RLLYCIKADPHCLNFLC 724 PF00357.10.fs: domain 1 of 1, from 823 to 837: score 21.5, E = 2.4e-06 *->KcGFFKRkykpqeee<-* K GFFKR+yk + +e sj03130 823 KAGFFKRQYKSILQE 837 PF00357.10.ls: domain 1 of 1, from 823 to 837: score 23.4, E = 0.00073 *->KcGFFKRkykpqeee<-* K GFFKR+yk + +e sj03130 823 KAGFFKRQYKSILQE 837 //