hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19390193/chunk_1/iprscan-20080813-19390193.nocrc
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Query sequence: sj03130
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
SM00191                                                 185.2    6.2e-51   4

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
SM00191         1/4      69   122 ..     1    56 []    32.6  5.2e-05
SM00191         2/4     124   180 ..     1    56 []    56.4  3.6e-12
SM00191         3/4     186   241 ..     1    56 []    66.5  3.3e-15
SM00191         4/4     248   305 ..     1    56 []    29.6  0.00043

Alignments of top-scoring domains:
SM00191: domain 1 of 4, from 69 to 122: score 32.6, E = 5.2e-05
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr....GaVYvyfgssn
                       gsy+Gysv  +g++     +++  ++ GAP++++ G+ Y++++++ 
     sj03130    69    FGSYLGYSVG-AGHFRSQ--HTTE-VVGGAPQheqiGKAYIFSIDEK 111  

                   sgggrciplqnls<-*
                      ++     +     
     sj03130   112 --ELNILHEMKGK    122  

SM00191: domain 2 of 4, from 124 to 180: score 56.4, E = 3.6e-12
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.......GaVYvyfg
                       gsyFG sv+ ++Dln D  G+ D llvGAP++++ +++G+V+vy +
     sj03130   124    LGSYFGASVC-AVDLNAD--GFSD-LLVGAPMqstireeGRVFVYIN 166  

                   ssnsgggrciplqnls<-*
                   s++  g  ++   + +   
     sj03130   167 SGS--GAVMNAMETNL    180  

SM00191: domain 3 of 4, from 186 to 241: score 66.5, E = 3.3e-15
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.....GaVYvyfgss
                       +++FG s++++gD+++D  G+ D +++GAP++++ +Ga+Y+y+g++
     sj03130   186    YAARFGESIVNLGDIDND--GFED-VAIGAPQeddlqGAIYIYNGRA 229  

                   nsgggrciplqnls<-*
                   +  g +++ +q ++   
     sj03130   230 D--GISSTFSQRIE    241  

SM00191: domain 4 of 4, from 248 to 305: score 29.6, E = 0.00043
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.......GaVYvyfg
                      + s+FG s+ g  D +++  Gy D ++vGA+r+++    +  +v+ +
     sj03130   248    SLSMFGQSISGQIDADNN--GYVD-VAVGAFRsdsavllRTRPVVIV 291  

                   ssnsgggrciplqnls<-*
                   +++   ++ +++  +    
     sj03130   292 DAS--LSHPESVNRTK    305  

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