hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-19451620/chunk_1/iprscan-20080813-19451620.nocrc
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Query sequence: sj03213
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01207.8.fs Dihydrouridine synthase (Dus)                  102.2    8.5e-30   1
PF01207.8.ls Dihydrouridine synthase (Dus)                  -72.3    4.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01207.8.ls   1/1       2   229 .]     1   347 []   -72.3  4.3e-05
PF01207.8.fs   1/1      78   166 ..   133   238 ..   102.2  8.5e-30

Alignments of top-scoring domains:
PF01207.8.ls: domain 1 of 1, from 2 to 229: score -72.3, E = 4.3e-05
                   *->llAkPMaGvtDlpfRrLvrefGagdLvvtEMVsakailrpekqre.r
                      +                 r +G g        s    lr++ + ++ 
     sj03213     2    SEG---------------RGYGGG--------SLPSNLRETPRWWpG 25   

                   mlseleeesrTsGtPlaVQLaGsdPallaeAAklvadslgadiIDiNmGC
                   ++++l+   +   +++ +Q     P l   AAk   +             
     sj03213    26 LPPSLPAKLP---GLRCLQ----GPGLWGLAAKVGTP------------- 55   

                   PakkvtrggaGsaLlrnpdlvarivkavvkAVkdiPVTvKiRiGwDllds
                                ++ +   + + v   +++   + VT KiR+++     
     sj03213    56 -------------WPPQKLPLFSPVLLAHEKLS-VSVTCKIRVFPE---- 87   

                   henaveiarrvedaGdvqalTvHGRKAWLsGlTRaqgYegpipAdWdaIk
                    +++v++a+++e aG +q+lTvHGR       T++q+    + A W+ Ik
     sj03213    88 IDKTVRYAQMLEKAG-CQLLTVHGR-------TKEQKGPLSGAASWEHIK 129  

                   qVkqavsskeiPViaNGdIkdaHFedakrclsetGaDgVMi..GRGalgn
                   +V++av+   iPV+aNG+I  +  +d++rcl+ tG++gVM  +G G  + 
     sj03213   130 AVRKAVA---IPVFANGNIQCL--QDVERCLRDTGVQGVMSagGQGPGQQ 174  

                   PwlfaeihtvktgefaprppwlaeeFilvaeivqehldkleeeygedkgl
                   P+  a      +g ++p ++ +                            
     sj03213   175 PGPHA------HGLIPPPRS-VPPT------------------------- 192  

                   rharkhlaWylkgltfpgaaqlRrelnevsdpteavvylinldadeaflk
                           +y+      ga  + r+ + +    ++ + l+++   + + +
     sj03213   193 --------AYCP---PHGA--VHRWCSSIPVCSDG-PELALSL--VRWHR 226  

                   aal<-*
                   +++   
     sj03213   227 RVS    229  

PF01207.8.fs: domain 1 of 1, from 78 to 166: score 102.2, E = 8.5e-30
                   *->VTvKiRiGwDlldshenaveiarrvedaGdvqalTvHGRKAWLsGlT
                      VT KiR+++      +++v++a+++e aG +q+lTvHGR       T
     sj03213    78    VTCKIRVFPE----IDKTVRYAQMLEKAG-CQLLTVHGR-------T 112  

                   RaqgYegpipAdWdaIkqVkqavsskeiPViaNGdIkdaHFedakrclse
                   ++q+    + A W+ Ik+V++av+   iPV+aNG+I  +  +d++rcl+ 
     sj03213   113 KEQKGPLSGAASWEHIKAVRKAVA---IPVFANGNIQCL--QDVERCLRD 157  

                   tGaDgVMiG<-*
                   tG++gVM +   
     sj03213   158 TGVQGVMSA    166  

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