# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osj03213.fasta.nr -Q sj03213.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sj03213, 229 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840771 sequences Expectation_n fit: rho(ln(x))= 5.4313+/-0.000189; mu= 8.5518+/- 0.011 mean_var=87.4369+/-16.818, 0's: 47 Z-trim: 68 B-trim: 127 in 1/64 Lambda= 0.137160 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|119610149|gb|EAW89743.1| dihydrouridine synthas ( 415) 828 173.0 5.3e-41 gi|117306348|gb|AAI26847.1| Dihydrouridine synthas ( 270) 662 140.0 3e-31 gi|194390922|dbj|BAG60579.1| unnamed protein produ ( 336) 656 138.9 7.9e-31 gi|119610150|gb|EAW89744.1| dihydrouridine synthas ( 378) 656 139.0 8.7e-31 gi|45946028|gb|AAH17081.4| DUS1L protein [Homo sap ( 406) 655 138.8 1e-30 gi|114671084|ref|XP_001167358.1| PREDICTED: PP3111 ( 473) 655 138.9 1.2e-30 gi|74749069|sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrourid ( 473) 655 138.9 1.2e-30 gi|114650483|ref|XP_001146302.1| PREDICTED: simila ( 473) 651 138.1 2e-30 gi|73964671|ref|XP_533136.2| PREDICTED: similar to ( 507) 641 136.1 8.4e-30 gi|194216507|ref|XP_001490768.2| PREDICTED: dihydr ( 475) 635 134.9 1.8e-29 gi|73964669|ref|XP_848227.1| PREDICTED: similar to ( 475) 631 134.1 3.2e-29 gi|18043390|gb|AAH19480.1| Dus1l protein [Mus musc ( 365) 627 133.2 4.5e-29 gi|12835061|dbj|BAB23138.1| unnamed protein produc ( 365) 627 133.2 4.5e-29 gi|81898593|sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrourid ( 475) 627 133.3 5.5e-29 gi|123288584|emb|CAM27542.1| dihydrouridine syntha ( 482) 627 133.3 5.5e-29 gi|149055089|gb|EDM06906.1| PP3111 protein, isofor ( 326) 621 132.0 9.4e-29 gi|81866863|sp|Q8K582|DUS1L_RAT tRNA-dihydrouridin ( 438) 621 132.1 1.2e-28 gi|38196995|gb|AAH03659.2| DUS1L protein [Homo sap ( 299) 611 130.0 3.5e-28 gi|118099689|ref|XP_001232803.1| PREDICTED: simila ( 473) 592 126.4 6.6e-27 gi|118099691|ref|XP_415637.2| PREDICTED: similar t ( 486) 592 126.4 6.8e-27 gi|126308862|ref|XP_001379483.1| PREDICTED: simila ( 480) 588 125.6 1.2e-26 gi|119912618|ref|XP_001252805.1| PREDICTED: hypoth ( 414) 584 124.8 1.8e-26 gi|80477797|gb|AAI08778.1| MGC78973 protein [Xenop ( 465) 566 121.2 2.3e-25 gi|47937507|gb|AAH72076.1| MGC78973 protein [Xenop ( 465) 566 121.2 2.3e-25 gi|47216250|emb|CAG05946.1| unnamed protein produc ( 505) 557 119.5 8.5e-25 gi|49903669|gb|AAH76792.1| MGC83715 protein [Xenop ( 464) 553 118.7 1.4e-24 gi|37589069|gb|AAH58873.1| Dihydrouridine synthase ( 479) 532 114.5 2.5e-23 gi|169154846|emb|CAQ15427.1| dihydrouridine syntha ( 496) 532 114.5 2.6e-23 gi|110749241|ref|XP_623799.2| PREDICTED: similar t ( 857) 527 113.7 7.7e-23 gi|109119167|ref|XP_001113015.1| PREDICTED: simila ( 476) 511 110.4 4.5e-22 gi|190617570|gb|EDV33094.1| GF22874 [Drosophila an ( 509) 485 105.2 1.7e-20 gi|190617573|gb|EDV33097.1| GF22885 [Drosophila an ( 513) 485 105.2 1.7e-20 gi|194165331|gb|EDW80232.1| GK21069 [Drosophila wi ( 519) 482 104.7 2.5e-20 gi|194114815|gb|EDW36858.1| GL25830 [Drosophila pe ( 507) 475 103.3 6.5e-20 gi|190660008|gb|EDV57200.1| GG24669 [Drosophila er ( 505) 473 102.9 8.6e-20 gi|15292203|gb|AAK93370.1| LD42056p [Drosophila me ( 505) 472 102.7 9.8e-20 gi|194123323|gb|EDW45366.1| GM16688 [Drosophila se ( 503) 471 102.5 1.1e-19 gi|194189618|gb|EDX03194.1| GD22975 [Drosophila si ( 505) 471 102.5 1.1e-19 gi|156213260|gb|EDO34286.1| predicted protein [Nem ( 288) 467 101.5 1.3e-19 gi|194173497|gb|EDW87108.1| GE16327 [Drosophila ya ( 505) 469 102.1 1.5e-19 gi|193912358|gb|EDW11225.1| GI15082 [Drosophila mo ( 510) 466 101.5 2.3e-19 gi|194148347|gb|EDW64045.1| GJ17247 [Drosophila vi ( 504) 464 101.1 2.9e-19 gi|91092412|ref|XP_967539.1| PREDICTED: similar to ( 461) 463 100.9 3.2e-19 gi|123288585|emb|CAM27543.1| dihydrouridine syntha ( 194) 445 97.0 2e-18 gi|190588219|gb|EDV28261.1| hypothetical protein T ( 427) 448 97.9 2.3e-18 gi|193905112|gb|EDW03979.1| GH10224 [Drosophila gr ( 503) 446 97.5 3.5e-18 gi|108882414|gb|EAT46639.1| t-diRNAhydrouridine sy ( 581) 444 97.2 5.1e-18 gi|193699924|ref|XP_001951016.1| PREDICTED: simila ( 471) 435 95.3 1.5e-17 gi|167875928|gb|EDS39311.1| t-diRNAhydrouridine sy ( 609) 436 95.6 1.6e-17 gi|157014776|gb|EAA12777.4| AGAP008484-PA [Anophel ( 560) 426 93.6 5.8e-17 >>gi|119610149|gb|EAW89743.1| dihydrouridine synthase 1- (415 aa) initn: 849 init1: 824 opt: 828 Z-score: 891.3 bits: 173.0 E(): 5.3e-41 Smith-Waterman score: 830; 80.368% identity (83.436% similar) in 163 aa overlap (67-217:133-295) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ .::::::::: ::::::::::::::::::: gi|119 DLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 110 120 130 140 150 160 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR 170 180 190 200 210 220 160 170 180 190 200 sj0321 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRSVP--PTAYCPPH----GAV-----HRWC :::::::::::::::::::::::::::::::. : : :. :: :: gi|119 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRGQPAQPRPVRGPEPCRVGAGRGVSGHRAG 230 240 250 260 270 280 210 220 sj0321 SSIP-VCSDGPELALSLVRWHRRVS . .: : :: : gi|119 APLPPVLRPGPPLQAVAPHAAGAPGAARGAGQGEDPGGHRCCEPGAEAAVSGGDIQAGGS 290 300 310 320 330 340 >>gi|117306348|gb|AAI26847.1| Dihydrouridine synthase 1- (270 aa) initn: 650 init1: 650 opt: 662 Z-score: 716.3 bits: 140.0 E(): 3e-31 Smith-Waterman score: 662; 75.182% identity (83.942% similar) in 137 aa overlap (67-202:133-269) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ .::::::::: ::::::::::::::::::: gi|117 DLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 110 120 130 140 150 160 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::.:::::::::::::.::::::::::::.:::::.. gi|117 MLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRKAVTIPVFANGNIQCLRDVERCIQ 170 180 190 200 210 220 160 170 180 190 200 210 sj0321 DTGVQGVMSAGGQGPGQQPGPHAH-GLIPPPRSVPPTAYCPPHGAVHRWCSSIPVCSDGP ::::::::::: :. :: . : . : :.. : : . : gi|117 DTGVQGVMSAGEAVPSPAAGPPSGAGGVRPHRGTTGPAEEPQASRGHH 230 240 250 260 270 220 sj0321 ELALSLVRWHRRVS >>gi|194390922|dbj|BAG60579.1| unnamed protein product [ (336 aa) initn: 689 init1: 656 opt: 656 Z-score: 708.6 bits: 138.9 E(): 7.9e-31 Smith-Waterman score: 656; 98.039% identity (98.039% similar) in 102 aa overlap (67-168:6-107) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ :::::::::: ::::::::::::::::::: gi|194 MIAKRVLLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 10 20 30 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR 40 50 60 70 80 90 160 170 180 190 200 210 sj0321 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRSVPPTAYCPPHGAVHRWCSSIPVCSDGPE :::::::::: : gi|194 DTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHLFKLWHHTLQVHQELREEL 100 110 120 130 140 150 >>gi|119610150|gb|EAW89744.1| dihydrouridine synthase 1- (378 aa) initn: 679 init1: 656 opt: 656 Z-score: 707.9 bits: 139.0 E(): 8.7e-31 Smith-Waterman score: 656; 98.039% identity (98.039% similar) in 102 aa overlap (67-168:116-217) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ :::::::::: ::::::::::::::::::: gi|119 EVFVQAALLAQDYCDAIDLNLGCPQMIAKRVLLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 90 100 110 120 130 140 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR 150 160 170 180 190 200 160 170 180 190 200 210 sj0321 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRSVPPTAYCPPHGAVHRWCSSIPVCSDGPE :::::::::: : gi|119 DTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTL 210 220 230 240 250 260 >>gi|45946028|gb|AAH17081.4| DUS1L protein [Homo sapiens (406 aa) initn: 684 init1: 651 opt: 655 Z-score: 706.4 bits: 138.8 E(): 1e-30 Smith-Waterman score: 655; 97.059% identity (98.039% similar) in 102 aa overlap (67-168:66-167) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ .::::::::: ::::::::::::::::::: gi|459 DLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 40 50 60 70 80 90 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|459 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR 100 110 120 130 140 150 160 170 180 190 200 210 sj0321 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRSVPPTAYCPPHGAVHRWCSSIPVCSDGPE :::::::::: : gi|459 DTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTL 160 170 180 190 200 210 >>gi|114671084|ref|XP_001167358.1| PREDICTED: PP3111 pro (473 aa) initn: 684 init1: 651 opt: 655 Z-score: 705.6 bits: 138.9 E(): 1.2e-30 Smith-Waterman score: 655; 97.059% identity (98.039% similar) in 102 aa overlap (67-168:133-234) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ .::::::::: ::::::::::::::::::: gi|114 DLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 110 120 130 140 150 160 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR 170 180 190 200 210 220 160 170 180 190 200 210 sj0321 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRSVPPTAYCPPHGAVHRWCSSIPVCSDGPE :::::::::: : gi|114 DTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTL 230 240 250 260 270 280 >>gi|74749069|sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine (473 aa) initn: 684 init1: 651 opt: 655 Z-score: 705.6 bits: 138.9 E(): 1.2e-30 Smith-Waterman score: 655; 97.059% identity (98.039% similar) in 102 aa overlap (67-168:133-234) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ .::::::::: ::::::::::::::::::: gi|747 DLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 110 120 130 140 150 160 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR 170 180 190 200 210 220 160 170 180 190 200 210 sj0321 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRSVPPTAYCPPHGAVHRWCSSIPVCSDGPE :::::::::: : gi|747 DTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTL 230 240 250 260 270 280 >>gi|114650483|ref|XP_001146302.1| PREDICTED: similar to (473 aa) initn: 680 init1: 647 opt: 651 Z-score: 701.3 bits: 138.1 E(): 2e-30 Smith-Waterman score: 651; 96.078% identity (98.039% similar) in 102 aa overlap (67-168:133-234) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ .::::::::: ::::::::::::::.:::: gi|114 DLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTMRYAQ 110 120 130 140 150 160 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR 170 180 190 200 210 220 160 170 180 190 200 210 sj0321 DTGVQGVMSAGGQGPGQQPGPHAHGLIPPPRSVPPTAYCPPHGAVHRWCSSIPVCSDGPE :::::::::: : gi|114 DTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTL 230 240 250 260 270 280 >>gi|73964671|ref|XP_533136.2| PREDICTED: similar to PP3 (507 aa) initn: 658 init1: 632 opt: 641 Z-score: 690.2 bits: 136.1 E(): 8.4e-30 Smith-Waterman score: 642; 68.553% identity (79.245% similar) in 159 aa overlap (62-210:159-316) 40 50 60 70 80 90 sj0321 AKLPGLRCLQGPGLWGLAAKVGTPWPPQKLPL-FSPVLLAHEKLSVSVTCKIRVFPEIDK :: : :::::::::: ::::::::::::: gi|739 LQRMSESAVCCGWGGQAGSWRRTNATLLRSPLSFPAVLLAHEKLSVPVTCKIRVFPEIDK 130 140 150 160 170 180 100 110 120 130 140 150 sj0321 TVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQD ::.::::::::::::::::::::::::::::.::::::::::::::::::::::::::.: gi|739 TVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRKAVAIPVFANGNIQCLRD 190 200 210 220 230 240 160 170 180 190 200 sj0321 VERCLRDTGVQGVMSAGG--QGP----GQQPG--PHAHGLIPPPRSVP-PTAYCPPHGAV ::::..:::::::::: : ..: :..:. :. . :. : : .: : gi|739 VERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVRQHPCPLSYVRAH-LF 250 260 270 280 290 300 210 220 sj0321 HRWCSSIPVCSDGPELALSLVRWHRRVS . : .. : gi|739 KLWHHTLQVHQELREELAKVKTLEGVTAVNQELKLRCQEDISRQKEGEKPSGGLPFFHWI 310 320 330 340 350 360 >>gi|194216507|ref|XP_001490768.2| PREDICTED: dihydrouri (475 aa) initn: 664 init1: 631 opt: 635 Z-score: 684.1 bits: 134.9 E(): 1.8e-29 Smith-Waterman score: 636; 69.281% identity (80.392% similar) in 153 aa overlap (67-210:133-284) 40 50 60 70 80 90 sj0321 LRCLQGPGLWGLAAKVGTPWPPQKLPLFSPVLLAHEKLSVSVTCKIRVFPEIDKTVRYAQ .::::::::: ::::::::::::::::::: gi|194 DLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQ 110 120 130 140 150 160 100 110 120 130 140 150 sj0321 MLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLR :::::::::::::::::::::::::.::::::::::::::::::::::::::.:::::.. gi|194 MLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRKAVAIPVFANGNIQCLRDVERCIQ 170 180 190 200 210 220 160 170 180 190 200 sj0321 DTGVQGVMSAGG--QGP----GQQPG--PHAHGLIPPPRSVP-PTAYCPPHGAVHRWCSS :::::::::: : ..: :..:. :. . :. : : .: : . : . gi|194 DTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVRQHPCPLSYVRAH-LFKLWHHT 230 240 250 260 270 280 210 220 sj0321 IPVCSDGPELALSLVRWHRRVS . : gi|194 LQVHQQLREELAKVKTLEGIAAVSQELKLRCQEDISRQKEGEKPLGGLPFFHWICQPYFR 290 300 310 320 330 340 229 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 19:42:30 2008 done: Wed Aug 13 19:45:15 2008 Total Scan time: 671.120 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]