# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osj03402.fasta.nr -Q sj03402.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sj03402, 155 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840702 sequences Expectation_n fit: rho(ln(x))= 5.0102+/-0.000185; mu= 6.8526+/- 0.010 mean_var=63.0719+/-12.429, 0's: 29 Z-trim: 40 B-trim: 922 in 1/65 Lambda= 0.161494 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|12239336|gb|AAG49437.1|AF136976_1 sec13-like pr ( 360) 1028 247.6 1.1e-63 gi|55728872|emb|CAH91174.1| hypothetical protein [ ( 360) 1022 246.2 2.8e-63 gi|20385056|gb|AAM21169.1|AF255625_1 putative nucl ( 360) 1021 246.0 3.3e-63 gi|154426016|gb|AAI51607.1| SEH1L protein [Bos tau ( 360) 1015 244.6 8.8e-63 gi|16552477|dbj|BAB71317.1| unnamed protein produc ( 421) 1007 242.8 3.6e-62 gi|29427941|sp|Q96EE3|SEH1L_HUMAN Nucleoporin SEH1 ( 421) 1000 241.2 1.1e-61 gi|73962117|ref|XP_860726.1| PREDICTED: similar to ( 360) 991 239.0 4.3e-61 gi|74151510|dbj|BAE38863.1| unnamed protein produc ( 359) 986 237.9 9.5e-61 gi|20072655|gb|AAH27244.1| Seh1l protein [Mus musc ( 360) 986 237.9 9.5e-61 gi|149586868|ref|XP_001516945.1| PREDICTED: simila ( 324) 980 236.4 2.3e-60 gi|73962119|ref|XP_547686.2| PREDICTED: similar to ( 420) 970 234.2 1.4e-59 gi|74150791|dbj|BAE25518.1| unnamed protein produc ( 364) 967 233.4 2.1e-59 gi|12847384|dbj|BAB27549.1| unnamed protein produc ( 357) 965 233.0 2.8e-59 gi|33086682|gb|AAP92653.1| Da1-6 [Rattus norvegicu (2377) 971 234.9 5e-59 gi|149064540|gb|EDM14743.1| rCG46902 [Rattus norve (3259) 971 235.0 6.4e-59 gi|126321968|ref|XP_001371539.1| PREDICTED: simila (2995) 950 230.1 1.8e-57 gi|118086760|ref|XP_419129.2| PREDICTED: similar t (2962) 916 222.1 4.3e-55 gi|54311344|gb|AAH84902.1| SEH1-like (S. cerevisia ( 360) 855 207.3 1.5e-51 gi|71051898|gb|AAH99027.1| MGC115524 protein [Xeno ( 360) 844 204.8 8.7e-51 gi|49118559|gb|AAH73561.1| MGC82845 protein [Xenop ( 360) 830 201.5 8.3e-50 gi|47217902|emb|CAG05024.1| unnamed protein produc ( 470) 799 194.4 1.5e-47 gi|37681939|gb|AAQ97847.1| sec13-like protein [Dan ( 364) 771 187.8 1.2e-45 gi|94732193|emb|CAK10890.1| SEH1-like (S. cerevisi ( 364) 768 187.1 1.9e-45 gi|149591293|ref|XP_001508732.1| PREDICTED: simila ( 104) 661 161.8 2.2e-38 gi|110756556|ref|XP_396810.3| PREDICTED: similar t ( 408) 541 134.2 1.7e-29 gi|167881912|gb|EDS45295.1| nucleoporin [Culex qui ( 344) 521 129.5 3.8e-28 gi|91086959|ref|XP_973035.1| PREDICTED: similar to ( 368) 519 129.1 5.5e-28 gi|55240564|gb|EAA09566.2| AGAP005174-PA [Anophele ( 359) 514 127.9 1.2e-27 gi|108877882|gb|EAT42107.1| nucleoporin, putative ( 361) 509 126.7 2.7e-27 gi|115770399|ref|XP_781224.2| PREDICTED: similar t ( 444) 490 122.4 6.9e-26 gi|193657121|ref|XP_001952415.1| PREDICTED: simila ( 356) 473 118.3 9e-25 gi|95102832|gb|ABF51357.1| sec13-like protein [Bom ( 377) 451 113.2 3.3e-23 gi|194110082|gb|EDW32125.1| GL11480 [Drosophila pe ( 354) 431 108.5 7.9e-22 gi|54635828|gb|EAL25231.1| GA21281-PA [Drosophila ( 354) 430 108.3 9.3e-22 gi|190662403|gb|EDV59595.1| GG23322 [Drosophila er ( 354) 429 108.1 1.1e-21 gi|193903389|gb|EDW02256.1| GH21895 [Drosophila gr ( 349) 422 106.4 3.4e-21 gi|193910336|gb|EDW09203.1| GI20394 [Drosophila mo ( 356) 421 106.2 4e-21 gi|190622304|gb|EDV37828.1| GF13653 [Drosophila an ( 354) 420 106.0 4.7e-21 gi|194175662|gb|EDW89273.1| GE19167 [Drosophila ya ( 354) 417 105.3 7.6e-21 gi|194159183|gb|EDW74084.1| GK21742 [Drosophila wi ( 356) 417 105.3 7.6e-21 gi|194145175|gb|EDW61571.1| GJ22120 [Drosophila vi ( 354) 415 104.8 1.1e-20 gi|194192536|gb|EDX06112.1| GD10530 [Drosophila si ( 354) 413 104.4 1.5e-20 gi|7304117|gb|AAF59154.1| CG8722-PA, isoform A [Dr ( 354) 413 104.4 1.5e-20 gi|194124815|gb|EDW46858.1| GM20999 [Drosophila se ( 354) 405 102.5 5.3e-20 gi|190585414|gb|EDV25482.1| hypothetical protein T ( 350) 376 95.7 5.7e-18 gi|190347372|gb|EDK39628.2| hypothetical protein P ( 345) 351 89.9 3.2e-16 gi|146416751|ref|XP_001484345.1| hypothetical prot ( 345) 343 88.0 1.2e-15 gi|146449494|gb|EDK43750.1| hypothetical protein L ( 348) 341 87.6 1.6e-15 gi|49646847|emb|CAG83234.1| unnamed protein produc ( 319) 337 86.6 2.9e-15 gi|149386862|gb|ABN66858.2| predicted protein [Pic ( 356) 325 83.9 2.2e-14 >>gi|12239336|gb|AAG49437.1|AF136976_1 sec13-like protei (360 aa) initn: 1028 init1: 1028 opt: 1028 Z-score: 1298.7 bits: 247.6 E(): 1.1e-63 Smith-Waterman score: 1028; 100.000% identity (100.000% similar) in 153 aa overlap (3-155:208-360) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|122 HSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR 300 310 320 330 340 350 sj0340 KHS ::: gi|122 KHS 360 >>gi|55728872|emb|CAH91174.1| hypothetical protein [Pong (360 aa) initn: 1022 init1: 1022 opt: 1022 Z-score: 1291.1 bits: 246.2 E(): 2.8e-63 Smith-Waterman score: 1022; 99.346% identity (100.000% similar) in 153 aa overlap (3-155:208-360) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|557 HSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|557 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAHFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR 300 310 320 330 340 350 sj0340 KHS ::: gi|557 KHS 360 >>gi|20385056|gb|AAM21169.1|AF255625_1 putative nucleopo (360 aa) initn: 1021 init1: 1021 opt: 1021 Z-score: 1289.8 bits: 246.0 E(): 3.3e-63 Smith-Waterman score: 1021; 99.346% identity (100.000% similar) in 153 aa overlap (3-155:208-360) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|203 HSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|203 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|203 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGR 300 310 320 330 340 350 sj0340 KHS ::: gi|203 KHS 360 >>gi|154426016|gb|AAI51607.1| SEH1L protein [Bos taurus] (360 aa) initn: 1015 init1: 1015 opt: 1015 Z-score: 1282.3 bits: 244.6 E(): 8.8e-63 Smith-Waterman score: 1015; 98.039% identity (100.000% similar) in 153 aa overlap (3-155:208-360) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI ::::::::.::::::::::::::::::::: gi|154 HAPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLLTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|154 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR ::::::::::::::::::::::::::::::::::::.::::.:::::::::::::::::: gi|154 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGNSNPSVGSNIPSLQNSLNGSSAGR 300 310 320 330 340 350 sj0340 KHS ::: gi|154 KHS 360 >>gi|16552477|dbj|BAB71317.1| unnamed protein product [H (421 aa) initn: 1007 init1: 1007 opt: 1007 Z-score: 1271.2 bits: 242.8 E(): 3.6e-62 Smith-Waterman score: 1007; 100.000% identity (100.000% similar) in 150 aa overlap (3-152:208-357) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|165 HSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|165 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR 300 310 320 330 340 350 sj0340 KHS gi|165 YFFTPLDSPRAGSRWSSYAQLLPPPPPPLVEHSCDADTANLQYPHPRRRYLSRPLNPLPE 360 370 380 390 400 410 >>gi|29427941|sp|Q96EE3|SEH1L_HUMAN Nucleoporin SEH1-lik (421 aa) initn: 1000 init1: 1000 opt: 1000 Z-score: 1262.4 bits: 241.2 E(): 1.1e-61 Smith-Waterman score: 1000; 99.333% identity (100.000% similar) in 150 aa overlap (3-152:208-357) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|294 HSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|294 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSTIPSLQNSLNGSSAGR 300 310 320 330 340 350 sj0340 KHS gi|294 YFFTPLDSPRAGSRWSSYAQLLPPPPPPLVEHSCDADTANLQYPHPRRRYLSRPLNPLPE 360 370 380 390 400 410 >>gi|73962117|ref|XP_860726.1| PREDICTED: similar to sec (360 aa) initn: 991 init1: 991 opt: 991 Z-score: 1252.1 bits: 239.0 E(): 4.3e-61 Smith-Waterman score: 991; 95.425% identity (99.346% similar) in 153 aa overlap (3-155:208-360) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|739 HSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR :::::::::::::::::::::::::::::::.::::.:::::: .::.:::::::::..: gi|739 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGNSQQGNSNPSLGPSIPNLQNSLNGSSSSR 300 310 320 330 340 350 sj0340 KHS ::: gi|739 KHS 360 >>gi|74151510|dbj|BAE38863.1| unnamed protein product [M (359 aa) initn: 986 init1: 986 opt: 986 Z-score: 1245.8 bits: 237.9 E(): 9.5e-61 Smith-Waterman score: 986; 94.771% identity (99.346% similar) in 153 aa overlap (3-155:207-359) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|741 HPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG ::.::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|741 LAVATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR :::::::::::::::::::::::::::::::::: :.:::::.::::.:::::::.::.: gi|741 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQLGNSNPSLSSNIPNLQNSLNGTSASR 300 310 320 330 340 350 sj0340 KHS ::: gi|741 KHS >>gi|20072655|gb|AAH27244.1| Seh1l protein [Mus musculus (360 aa) initn: 986 init1: 986 opt: 986 Z-score: 1245.8 bits: 237.9 E(): 9.5e-61 Smith-Waterman score: 986; 94.771% identity (99.346% similar) in 153 aa overlap (3-155:208-360) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|200 HPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 180 190 200 210 220 230 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG ::.::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|200 LAVATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 240 250 260 270 280 290 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQGTSNPSLGSNIPSLQNSLNGSSAGR :::::::::::::::::::::::::::::::::: :.:::::.::::.:::::::.::.: gi|200 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQLGNSNPSLSSNIPNLQNSLNGTSASR 300 310 320 330 340 350 sj0340 KHS ::: gi|200 KHS 360 >>gi|149586868|ref|XP_001516945.1| PREDICTED: similar to (324 aa) initn: 907 init1: 840 opt: 980 Z-score: 1238.9 bits: 236.4 E(): 2.3e-60 Smith-Waterman score: 980; 95.455% identity (98.052% similar) in 154 aa overlap (3-155:171-324) 10 20 30 sj0340 VTKYAKAETLMTVTDPVHDIAFAPNLGRSFHI :::::::::::::::::::::::::::::: gi|149 HSPMIAVGSDDNSPNVTAKVQIYEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHI 150 160 170 180 190 200 40 50 60 70 80 90 sj0340 LAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LAVATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSG 210 220 230 240 250 260 100 110 120 130 140 150 sj0340 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSQQ-GTSNPSLGSNIPSLQNSLNGSSAG :::::::::::::::::::::::::::::::::.: :.:: ::::: :.::::::::::: gi|149 DDGCVRLWKANYMDNWKCTGILKGNGSPVNGSSSQLGNSNASLGSNNPNLQNSLNGSSAG 270 280 290 300 310 320 sj0340 RKHS :::: gi|149 RKHS 155 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 19:48:24 2008 done: Wed Aug 13 19:51:22 2008 Total Scan time: 575.590 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]