hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-18254189/chunk_1/iprscan-20090618-18254189.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj03418 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08441.2.fs Integrin alpha 493.2 2e-149 1 PF08441.2.ls Integrin alpha 494.9 9e-146 1 PF00092.18.fs von Willebrand factor type A domain 178.6 5.9e-56 1 PF00092.18.ls von Willebrand factor type A domain 180.5 3.8e-51 1 PF01839.13.ls FG-GAP repeat 73.8 5e-19 3 PF01839.13.fs FG-GAP repeat 68.2 5.1e-19 3 PF00357.10.fs Integrin alpha cytoplasmic region 24.8 1.8e-07 1 PF00357.10.ls Integrin alpha cytoplasmic region 26.8 6.9e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00092.18.fs 1/1 166 344 .. 1 195 [] 178.6 5.9e-56 PF00092.18.ls 1/1 166 344 .. 1 195 [] 180.5 3.8e-51 PF01839.13.fs 1/3 473 510 .. 1 36 [] 24.0 4.2e-06 PF01839.13.ls 1/3 473 510 .. 1 36 [] 26.0 0.00012 PF01839.13.ls 2/3 537 571 .. 1 36 [] 23.7 0.00062 PF01839.13.fs 2/3 537 571 .. 1 36 [] 21.8 1.8e-05 PF01839.13.fs 3/3 599 628 .. 1 36 [] 22.4 1.2e-05 PF01839.13.ls 3/3 599 628 .. 1 36 [] 24.1 0.00045 PF08441.2.ls 1/1 630 1043 .. 1 483 [] 494.9 9e-146 PF08441.2.fs 1/1 630 1043 .. 1 483 [] 493.2 2e-149 PF00357.10.fs 1/1 1140 1154 .. 1 15 [] 24.8 1.8e-07 PF00357.10.ls 1/1 1140 1154 .. 1 15 [] 26.8 6.9e-05 Alignments of top-scoring domains: PF00092.18.fs: domain 1 of 1, from 166 to 344: score 178.6, E = 5.9e-56 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY DivFl+DgSgSi++ + F+++k Fv +++ ++ ++t ++l+qY sj03418 166 DIVFLIDGSGSIDQND-FNQMKGFVQAVMG-QF--EGTDTLFALMQY 208 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs s+ +++f+++++++ +++++v + + +l+G T+ t++++ +++ +lf+ sj03418 209 SNLLKIHFTFTQFRTSPSQQSLV-DPIVQLKGLTF-TATGILTVVTQLFH 256 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg ++g+R+ a+k+li++TDG+ + ++++++ ++ +++k g sj03418 257 H-------KNGARK-SAKKILIVITDGQKYKDPLEYsDVIPQAEK---AG 295 itvfavGvG....gdvdeaeLr.iasepcseghvfyvedfdalwlqlqdi i+++a+GvG+ +g ++eL++i+s p +hvf+v++f a l +i sj03418 296 IIRYAIGVGhafqGPTARQELNtISSAP-PQDHVFKVDNFAA--LG--SI 340 qeql<-* q+ql sj03418 341 QKQL 344 PF00092.18.ls: domain 1 of 1, from 166 to 344: score 180.5, E = 3.8e-51 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY DivFl+DgSgSi++ + F+++k Fv +++ ++ ++t ++l+qY sj03418 166 DIVFLIDGSGSIDQND-FNQMKGFVQAVMG-QF--EGTDTLFALMQY 208 ssdvrtefsLndysskddllaavlknlrylgGgTnNtgkALkyalenlfs s+ +++f+++++++ +++++v + + +l+G T+ t++++ +++ +lf+ sj03418 209 SNLLKIHFTFTQFRTSPSQQSLV-DPIVQLKGLTF-TATGILTVVTQLFH 256 stMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkkgvg ++g+R+ a+k+li++TDG+ + ++++++ ++ +++k g sj03418 257 H-------KNGARK-SAKKILIVITDGQKYKDPLEYsDVIPQAEK---AG 295 itvfavGvG....gdvdeaeLr.iasepcseghvfyvedfdalwlqlqdi i+++a+GvG+ +g ++eL++i+s p +hvf+v++f a l +i sj03418 296 IIRYAIGVGhafqGPTARQELNtISSAP-PQDHVFKVDNFAA--LG--SI 340 qeql<-* q+ql sj03418 341 QKQL 344 PF01839.13.fs: domain 1 of 3, from 473 to 510: score 24.0, E = 4.2e-06 *->fgssvaagDlnGDGrpDlvv.gaPgadggt.dgsvyll<-* fg+s++ +D++ DG +Dl++ gaP +++ t++g+v++ sj03418 473 FGASLCSVDVDSDGSTDLILiGAPHYYEQTrGGQVSVC 510 PF01839.13.ls: domain 1 of 3, from 473 to 510: score 26.0, E = 0.00012 *->fgssvaagDlnGDGrpDlvv.gaPgadggt.dgsvyll<-* fg+s++ +D++ DG +Dl++ gaP +++ t++g+v++ sj03418 473 FGASLCSVDVDSDGSTDLILiGAPHYYEQTrGGQVSVC 510 PF01839.13.ls: domain 2 of 3, from 537 to 571: score 23.7, E = 0.00062 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* +++ ++gD+n D + D+++gaP g ++++g+vyl+ sj03418 537 GAALTVLGDVNEDKLIDVAIGAP----GEqEnrGAVYLF 571 PF01839.13.fs: domain 2 of 3, from 537 to 571: score 21.8, E = 1.8e-05 *->fgssvaagDlnGDGrpDlvvgaPgadggt.d..gsvyll<-* +++ ++gD+n D + D+++gaP g ++++g+vyl+ sj03418 537 GAALTVLGDVNEDKLIDVAIGAP----GEqEnrGAVYLF 571 PF01839.13.fs: domain 3 of 3, from 599 to 628: score 22.4, E = 1.2e-05 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-* fg+++++g+Dl+ DG++Dl+v g+++ +v ll sj03418 599 FGQALSGGqDLTQDGLMDLAV-------GArG-QVLLL 628 PF01839.13.ls: domain 3 of 3, from 599 to 628: score 24.1, E = 0.00045 *->fgssvaag.DlnGDGrpDlvvgaPgadggt.dgsvyll<-* fg+++++g+Dl+ DG++Dl+v g+++ +v ll sj03418 599 FGQALSGGqDLTQDGLMDLAV-------GArG-QVLLL 628 PF08441.2.ls: domain 1 of 1, from 630 to 1043: score 494.9, E = 9e-146 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg s PV++v + + f+P e+ +++ C++++ + + ++ ++tvC+t+++ sj03418 630 SLPVLKVGVAMRFSPVEVAKAVYRCWEEKPS-ALEAGDATVCLTIQK 675 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg +s dqlg+ q++++++L+LD+ +rl+sRa+F+ etk++tltr+ +lg sj03418 676 SSLDQLGDIQSSVRFDLALDP----GRLTSRAIFN-ETKNPTLTRRKTLG 720 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg + + +Cet+kl+L+d cv+D++sPI++ ln+sL +++p +++++ sj03418 721 L--GIHCETLKLLLPD--CVEDVVSPIILHLNFSL-----VREPIPSPQN 761 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtptLv l +PvL+ s++ +t+++pFeKnCG D++C+ DL ++ sfs+ ++tL+ sj03418 762 L-RPVLAVGSQDLFTASLPFEKNCGQDGLCEGDLGVTLSFSG---LQTLT 807 vGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverl..qnpese vG+ eL++++tv+N GEd+Y++ ++++yP+gLs ++v+ +++q ++s sj03418 808 VGSSLELNVIVTVWNA-GEDSYGTVVSLYYPAGLSHRRVSGAqkQPHQSA 856 kplsCesnke..ngtrsvtCdlGnPimkagsqvtftitFdvsslsglgds +l Ce +++++g+rs C++++Pi+ +gs+ tf +tFdvs ++ lgd+ sj03418 857 LRLACETVPTedEGLRSSRCSVNHPIFHEGSNGTFIVTFDVSYKATLGDR 906 lefdlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffng +++++ a+S+N++ ++++ t++le+pVky+++++i + +e+s+++fn+ sj03418 907 MLMRASASSENNKA--SSSKATFQLELPVKYAVYTMI-SRQEESTKYFNF 953 snwegesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyel +s e++ +e eh+Y+v+Nl ++ + +s+n+++P+ sj03418 954 A--------TSDEKKM---KEAEHRYRVNNLSQR-DLA-ISINFWVPVL- 989 asdsngkvpllYll.evqtgsksegnvsCspqnlninplnldlsssgttp +ng +++++ e ++ +++ C ++ ++++++ sj03418 990 ---LNGV-AVWDVVmEAPS-----QSLPCVSE----------RKPPQHSD 1020 rleallrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +l++ r + LdC s+a+Cl++rC sj03418 1021 FLTQISRS----------------PMLDC--SIADCLQFRC 1043 PF08441.2.fs: domain 1 of 1, from 630 to 1043: score 493.2, E = 2e-149 *->sRPVvsvsaslsftPaeinpekknCqlpggttpvsCfnvtvCftvtg s PV++v + + f+P e+ +++ C++++ + + ++ ++tvC+t+++ sj03418 630 SLPVLKVGVAMRFSPVEVAKAVYRCWEEKPS-ALEAGDATVCLTIQK 675 ksvdqlgpqqivlnytLqLDsarkkkrlisRalFldetksstltrnlvlg +s dqlg+ q++++++L+LD+ +rl+sRa+F+ etk++tltr+ +lg sj03418 676 SSLDQLGDIQSSVRFDLALDP----GRLTSRAIFN-ETKNPTLTRRKTLG 720 nqgseeCetfklyLrdEscvrDklsPIvirlnysLesepkdgrpradlpg + + +Cet+kl+L+d cv+D++sPI++ ln+sL +++p +++++ sj03418 721 L--GIHCETLKLLLPD--CVEDVVSPIILHLNFSL-----VREPIPSPQN 761 llqPvLnqysptsitfqipFeKnCGeDniCvaDLqLsvsfslregtptLv l +PvL+ s++ +t+++pFeKnCG D++C+ DL ++ sfs+ ++tL+ sj03418 762 L-RPVLAVGSQDLFTASLPFEKNCGQDGLCEGDLGVTLSFSG---LQTLT 807 vGdtkeLtLsitvtNkPGEdAYeaqLvvtyPpgLsfskverl..qnpese vG+ eL++++tv+N GEd+Y++ ++++yP+gLs ++v+ +++q ++s sj03418 808 VGSSLELNVIVTVWNA-GEDSYGTVVSLYYPAGLSHRRVSGAqkQPHQSA 856 kplsCesnke..ngtrsvtCdlGnPimkagsqvtftitFdvsslsglgds +l Ce +++++g+rs C++++Pi+ +gs+ tf +tFdvs ++ lgd+ sj03418 857 LRLACETVPTedEGLRSSRCSVNHPIFHEGSNGTFIVTFDVSYKATLGDR 906 lefdlqatStNeepsenlndntvtleipVkyeadlsisGvsepsqvffng +++++ a+S+N++ ++++ t++le+pVky+++++i + +e+s+++fn+ sj03418 907 MLMRASASSENNKA--SSSKATFQLELPVKYAVYTMI-SRQEESTKYFNF 953 snwegesapeseedvGpkvpevehtYevrNlGpsLtvpnaslniqwPyel +s e++ +e eh+Y+v+Nl ++ + +s+n+++P+ sj03418 954 A--------TSDEKKM---KEAEHRYRVNNLSQR-DLA-ISINFWVPVL- 989 asdsngkvpllYll.evqtgsksegnvsCspqnlninplnldlsssgttp +ng +++++ e ++ +++ C ++ ++++++ sj03418 990 ---LNGV-AVWDVVmEAPS-----QSLPCVSE----------RKPPQHSD 1020 rleallrnsrerqeigesevaqsykvLdCsssnasClrirC<-* +l++ r + LdC s+a+Cl++rC sj03418 1021 FLTQISRS----------------PMLDC--SIADCLQFRC 1043 PF00357.10.fs: domain 1 of 1, from 1140 to 1154: score 24.8, E = 1.8e-07 *->KcGFFKRkykpqeee<-* K+GFFKR+yk++ e+ sj03418 1140 KLGFFKRHYKEMLED 1154 PF00357.10.ls: domain 1 of 1, from 1140 to 1154: score 26.8, E = 6.9e-05 *->KcGFFKRkykpqeee<-* K+GFFKR+yk++ e+ sj03418 1140 KLGFFKRHYKEMLED 1154 //