hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18254189/chunk_1/iprscan-20090618-18254189.nocrc
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Query sequence: sj03418
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
SM00327                                                 155.7    4.7e-42   1
SM00191                                                 151.4      9e-41   5

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
SM00191         1/5      47    97 ..     1    56 []     8.7       25
SM00327         1/1     164   349 ..     1   193 []   155.7  4.7e-42
SM00191         2/5     416   465 ..     1    56 []    18.9      0.7
SM00191         3/5     469   526 ..     1    56 []    48.5  8.6e-10
SM00191         4/5     532   588 ..     1    56 []    52.2  6.6e-11
SM00191         5/5     595   646 ..     1    56 []    23.1    0.039

Alignments of top-scoring domains:
SM00191: domain 1 of 5, from 47 to 97: score 8.7, E = 25
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr........GaVYvyf
                      +++ FG sv+    +     G    l+vGAP++    +++G+ Y + 
     sj03418    47    DAGGFGQSVV---QF-----GGSR-LVVGAPLevvaanqtGRLYDCA 84   

                   gssnsgggrciplqnls<-*
                        ++g c+p++  +   
     sj03418    85 ----AATGMCQPIPLHI    97   

SM00327: domain 1 of 1, from 164 to 349: score 155.7, E = 4.7e-42
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld..gdrvglvqFss
                      ++D+vfl+DgSgS+ +n+f+++k fv+++++q++++++ ++l+q+s+
     sj03418   164    EMDIVFLIDGSGSIDQNDFNQMKGFVqAVMGQFEgtDTLFALMQYSN 210  

                   dvrvefpln.sqskdallealaslsykglkdyslgggTnlg.ALqyalen
                     ++ f+++++++  + ++ ++ + +       l+g T++++++ +++ +
     sj03418   211 LLKIHFTFTqFRTSPSQQSLVDPIVQ-------LKGLTFTAtGILTVVTQ 253  

                   lfsesag.rrgagratkiSnvpkvliliTDGesndggddpedileaakel
                   lf+ ++g r+ a         +k+li+iTDG+      dp ++++++  +
     sj03418   254 LFHHKNGaRKSA---------KKILIVITDGQKYK---DPLEYSDVIPQA 291  

                   krsgvkvfvigvgna.....de.elkeiasep.gehvffdvsdvedlpsl
                    ++g++ ++igvg+a ++++ ++el++i+s+p+ +hvf+ v+++++l s+
     sj03418   292 EKAGIIRYAIGVGHAfqgptARqELNTISSAPpQDHVFK-VDNFAALGSI 340  

                   ldllidlll<-*
                    + l++ +    
     sj03418   341 QKQLQEKIY    349  

SM00191: domain 2 of 5, from 416 to 465: score 18.9, E = 0.7
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr....GaVYvyfgssn
                       +sy+Gys   +       +G +  l+ GAPr +++G+ +++ +   
     sj03418   416    RDSYLGYSTELALW-----KGVQN-LVLGAPRyqhtGKAVIFTQV-- 454  

                   sgggrciplqnls<-*
                     ++++     ++   
     sj03418   455 --SRQWRKKAEVT    465  

SM00191: domain 3 of 5, from 469 to 526: score 48.5, E = 8.6e-10
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.......GaVYvyfg
                      +gsyFG s++  +D++ D  G +Dl+l+GAP   +++++G+V v++ 
     sj03418   469    IGSYFGASLC-SVDVDSD--GSTDLILIGAPHyyeqtrgGQVSVCPL 512  

                   ssnsgggrciplqnls<-*
                    ++    +++   +l+   
     sj03418   513 PRG--RVQWQCDAVLR    526  

SM00191: domain 4 of 5, from 532 to 588: score 52.2, E = 6.6e-11
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.....GaVYvyfgss
                      p+++FG +++ +gD+n D     D +++GAP++++++GaVY+++g s
     sj03418   532    PWGRFGAALTVLGDVNED--KLID-VAIGAPGeqenrGAVYLFHGAS 575  

                   nsgggrciplqnls<-*
                    s g + + +q +    
     sj03418   576 ES-GISPSHSQRIA    588  

SM00191: domain 5 of 5, from 595 to 646: score 23.1, E = 0.039
                   *->pgsyFGysvagvgDlngDksGypDlllvGAPr.....GaVYvyfgss
                         yFG ++ g+ Dl +D  G +D l+vGA ++    +  +v+    
     sj03418   595    RLQYFGQALSGGQDLTQD--GLMD-LAVGARGqvlllRSLPVLK--- 635  

                   nsgggrciplqnls<-*
                       g   +++ ++   
     sj03418   636 ---VGVAMRFSPVE    646  

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