hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-20020862/chunk_1/iprscan-20080813-20020862.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj03455 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01582.10.fs TIR domain 158.3 8.3e-48 1 PF01582.10.ls TIR domain 160.2 5e-45 1 PF00560.23.ls Leucine Rich Repeat 140.1 5.4e-39 14 PF00560.23.fs Leucine Rich Repeat 116.2 9e-32 14 PF01463.14.fs Leucine rich repeat C-terminal domain 17.9 0.00012 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 1/14 60 82 .. 1 24 [] 9.8 3.9 PF00560.23.ls 2/14 84 106 .. 1 24 [] 13.6 0.68 PF00560.23.fs 2/14 84 106 .. 1 24 [] 11.7 0.038 PF00560.23.fs 3/14 108 130 .. 1 24 [] 11.8 0.037 PF00560.23.ls 3/14 108 130 .. 1 24 [] 13.6 0.66 PF00560.23.ls 5/14 156 179 .. 1 24 [] 12.3 1.3 PF00560.23.ls 6/14 181 203 .. 1 24 [] 15.8 0.14 PF00560.23.fs 6/14 181 203 .. 1 24 [] 14.0 0.009 PF00560.23.ls 7/14 379 395 .. 1 24 [] 11.0 2.3 PF00560.23.ls 8/14 405 426 .. 1 24 [] 11.9 1.6 PF00560.23.ls 9/14 428 448 .. 1 24 [] 9.0 5.5 PF00560.23.ls 11/14 477 500 .. 1 24 [] 9.6 4.3 PF00560.23.ls 12/14 502 524 .. 1 24 [] 15.2 0.22 PF00560.23.fs 13/14 502 524 .. 1 24 [] 13.3 0.013 PF00560.23.ls 13/14 526 548 .. 1 24 [] 10.5 2.8 PF01463.14.fs 2/2 611 633 .. 1 26 [] 17.3 0.00019 PF01582.10.fs 1/1 681 819 .. 1 150 [] 158.3 8.3e-48 PF01582.10.ls 1/1 681 819 .. 1 150 [] 160.2 5e-45 Alignments of top-scoring domains: PF00560.23.ls: domain 1 of 14, from 60 to 82: score 9.8, E = 3.9 *->nLeeLdLsgCNpsltgslpss.l.nl<-* + ++LdLs N +l ++l s ++ ++ sj03455 60 STKNLDLSF-N-PL-RHLGSYsFfSF 82 PF00560.23.ls: domain 2 of 14, from 84 to 106: score 13.6, E = 0.68 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++LdLs+C ++ ++++++ ++l sj03455 84 ELQVLDLSRC--EIQ-TIEDGaYqSL 106 PF00560.23.fs: domain 2 of 14, from 84 to 106: score 11.7, E = 0.038 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++LdLs+C ++ ++++++ ++l sj03455 84 ELQVLDLSRC--EIQ-TIEDGaYqSL 106 PF00560.23.fs: domain 3 of 14, from 108 to 130: score 11.8, E = 0.037 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L +L L g N +++ sl+ +++++l sj03455 108 HLSTLILTG-N-PIQ-SLALGaFsGL 130 PF00560.23.ls: domain 3 of 14, from 108 to 130: score 13.6, E = 0.66 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L +L L g N +++ sl+ +++++l sj03455 108 HLSTLILTG-N-PIQ-SLALGaFsGL 130 PF00560.23.ls: domain 5 of 14, from 156 to 179: score 12.3, E = 1.3 *->nLeeLdLsgCNpsltgs..lpssl.nl<-* +L+eL++ + N ++ s +lp+ ++nl sj03455 156 TLKELNVAH-N-LIQ-SfkLPEYFsNL 179 PF00560.23.ls: domain 6 of 14, from 181 to 203: score 15.8, E = 0.14 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nLe+LdLs+ N +++ s+ +l++l sj03455 181 NLEHLDLSS-N-KIQ-SIYCTdLrVL 203 PF00560.23.fs: domain 6 of 14, from 181 to 203: score 14.0, E = 0.009 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nLe+LdLs+ N +++ s+ +l++l sj03455 181 NLEHLDLSS-N-KIQ-SIYCTdLrVL 203 PF00560.23.ls: domain 7 of 14, from 379 to 395: score 11.0, E = 2.3 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le LdLs+ N +l+ ++++ sj03455 379 SLEFLDLSR-N-GLS------FkGC 395 PF00560.23.ls: domain 8 of 14, from 405 to 426: score 11.9, E = 1.6 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++LdLs N ++ +++s++ +l sj03455 405 SLKYLDLSF-N-GVI-TMSSNFlGL 426 PF00560.23.ls: domain 9 of 14, from 428 to 448: score 9.0, E = 5.5 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le+Ld+++ + +l + +++ ++++ sj03455 428 QLEHLDFQH-S-NL-KQMSE-FsVF 448 PF00560.23.ls: domain 11 of 14, from 477 to 500: score 9.6, E = 4.3 *->nLeeLdLsgCNpsltgs..lpssl.nl<-* +Le+L + g N s++ ++ lp+ ++ l sj03455 477 SLEVLKMAG-N-SFQ-EnfLPDIFtEL 500 PF00560.23.ls: domain 12 of 14, from 502 to 524: score 15.2, E = 0.22 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+ LdLs C +l+ l++ ++++l sj03455 502 NLTFLDLSQC--QLE-QLSPTaFnSL 524 PF00560.23.fs: domain 13 of 14, from 502 to 524: score 13.3, E = 0.013 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL+ LdLs C +l+ l++ ++++l sj03455 502 NLTFLDLSQC--QLE-QLSPTaFnSL 524 PF00560.23.ls: domain 13 of 14, from 526 to 548: score 10.5, E = 2.8 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L++s+ N ++ sl+ + ++l sj03455 526 SLQVLNMSH-N-NFF-SLDTFpYkCL 548 PF01463.14.fs: domain 2 of 2, from 611 to 633: score 17.3, E = 0.00019 *->dlrCasPeslrGqplldlppsdfsCp<-* ++ Ca P+ +G+p+l+l+ +C+ sj03455 611 RMECATPSDKQGMPVLSLN---ITCQ 633 PF01582.10.fs: domain 1 of 1, from 681 to 819: score 158.3, E = 8.3e-48 *->vFvsfsgksrsnddrdtFvshllkeLeekkqpgiklfiddrDelpGe +Fv++s+ +d+d++ ++l+k+Lee+ p+++l++++rD++pG+ sj03455 681 AFVIYSS-----QDEDWVRNELVKNLEEG-VPPFQLCLHYRDFIPGV 721 silen.lfeaIekSRiaivifSsnyasSelWCLdELveimkcaleqgnkk +i++n ++e+ +kSR++iv++S+++++S+ WC +E ++++ +++ + sj03455 722 AIAANiIHEGFHKSRKVIVVVSQHFIQSR-WCIFEYEIAQTWQFLSSRAG 770 vilpiFykVdpsdvrpkqtgkFgkaflktlkwsgdktersqsdrikfWkk +i++++ kV+++ r++ +++++++ +++l+w++ r+ fW++ sj03455 771 IIFIVLQKVEKTLLRQQVELYRLLSRNTYLEWEDSV-----LGRHIFWRR 815 alya<-* +++a sj03455 816 LRKA 819 PF01582.10.ls: domain 1 of 1, from 681 to 819: score 160.2, E = 5e-45 *->vFvsfsgksrsnddrdtFvshllkeLeekkqpgiklfiddrDelpGe +Fv++s+ +d+d++ ++l+k+Lee+ p+++l++++rD++pG+ sj03455 681 AFVIYSS-----QDEDWVRNELVKNLEEG-VPPFQLCLHYRDFIPGV 721 silen.lfeaIekSRiaivifSsnyasSelWCLdELveimkcaleqgnkk +i++n ++e+ +kSR++iv++S+++++S+ WC +E ++++ +++ + sj03455 722 AIAANiIHEGFHKSRKVIVVVSQHFIQSR-WCIFEYEIAQTWQFLSSRAG 770 vilpiFykVdpsdvrpkqtgkFgkaflktlkwsgdktersqsdrikfWkk +i++++ kV+++ r++ +++++++ +++l+w++ r+ fW++ sj03455 771 IIFIVLQKVEKTLLRQQVELYRLLSRNTYLEWEDSV-----LGRHIFWRR 815 alya<-* +++a sj03455 816 LRKA 819 //