# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osj03455.fasta.nr -Q sj03455.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sj03455, 844 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6828740 sequences Expectation_n fit: rho(ln(x))= 5.0375+/-0.000183; mu= 13.0684+/- 0.010 mean_var=72.9068+/-14.255, 0's: 51 Z-trim: 135 B-trim: 4 in 1/67 Lambda= 0.150207 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|20140413|sp|O00206|TLR4_HUMAN Toll-like recepto ( 839) 5333 1165.8 0 gi|20140908|sp|Q9TTN0.1|TLR4_PANPA Toll-like recep ( 839) 5314 1161.6 0 gi|114626378|ref|XP_001146983.1| PREDICTED: simila ( 998) 5311 1161.1 0 gi|194068435|dbj|BAG55038.1| toll-like receptor 4 ( 839) 5301 1158.8 0 gi|194068433|dbj|BAG55037.1| toll-like receptor 4 ( 839) 5296 1157.7 0 gi|62287777|sp|Q8SPE8|TLR4_GORGO Toll-like recepto ( 837) 5295 1157.5 0 gi|2459628|gb|AAC34135.1| Toll-like receptor 4 [Ho ( 799) 5262 1150.4 0 gi|158261129|dbj|BAF82742.1| unnamed protein produ ( 799) 5256 1149.1 0 gi|194068437|dbj|BAG55039.1| toll-like receptor 4 ( 830) 5151 1126.3 0 gi|184132924|gb|ACC68078.1| toll-like receptor 4 [ ( 832) 5147 1125.5 0 gi|48428653|sp|Q8SPE9|TLR4_PONPY Toll-like recepto ( 828) 5134 1122.6 0 gi|62085602|gb|AAX63196.1| Toll-like receptor 4 [M ( 799) 5014 1096.6 0 gi|194068439|dbj|BAG55040.1| toll-like receptor 4 ( 826) 4978 1088.8 0 gi|194068441|dbj|BAG55041.1| toll-like receptor 4 ( 826) 4978 1088.8 0 gi|109110454|ref|XP_001097813.1| PREDICTED: simila ( 826) 4972 1087.5 0 gi|20140907|sp|Q9TSP2.1|TLR4_PAPAN Toll-like recep ( 826) 4961 1085.1 0 gi|119607856|gb|EAW87450.1| hCG27399, isoform CRA_ ( 782) 4957 1084.3 0 gi|6403467|gb|AAF07823.1|AF177766_1 human toll-lik ( 752) 4931 1078.6 0 gi|109110456|ref|XP_001098003.1| PREDICTED: simila ( 786) 4901 1072.1 0 gi|184132942|gb|ACC68087.1| toll-like receptor 4 [ ( 716) 4311 944.2 0 gi|119607855|gb|EAW87449.1| hCG27399, isoform CRA_ ( 639) 4236 927.9 0 gi|194383470|dbj|BAG64706.1| unnamed protein produ ( 639) 4225 925.6 0 gi|20140798|sp|Q9GL65|TLR4_BOVIN Toll-like recepto ( 841) 4125 904.0 0 gi|71673362|gb|AAZ38830.1| toll-like receptor 4 [B ( 841) 4124 903.8 0 gi|19744157|dbj|BAB86840.1| Toll-like receptor 4 [ ( 841) 4122 903.3 0 gi|111414439|gb|ABH09759.1| toll-like receptor 4 [ ( 841) 4119 902.7 0 gi|34148380|gb|AAQ62700.1| toll-like receptor 4 [B ( 841) 4119 902.7 0 gi|20140868|sp|Q9MYW3|TLR4_HORSE Toll-like recepto ( 843) 4112 901.2 0 gi|34148385|gb|AAQ62701.1| toll-like receptor 4 [B ( 841) 4109 900.5 0 gi|116256089|sp|Q2V898|TLR4_BOSTR Toll-like recept ( 841) 4088 896.0 0 gi|156720180|dbj|BAF76728.1| toll-like receptor 4 ( 841) 4088 896.0 0 gi|166209831|gb|ABY85152.1| toll-like receptor 4 p ( 841) 4083 894.9 0 gi|20140478|sp|P58727|TLR4_FELCA Toll-like recepto ( 833) 4066 891.2 0 gi|111610303|gb|ABH11655.1| toll-like receptor 4 p ( 841) 4038 885.1 0 gi|169264956|dbj|BAG12306.1| Toll-like receptor 4 ( 841) 3986 873.9 0 gi|58826391|gb|AAW82895.1| toll-like receptor 4 [S ( 841) 3986 873.9 0 gi|58696572|emb|CAF31361.1| toll-like receptor 4 [ ( 841) 3982 873.0 0 gi|62903518|sp|Q68Y56|TLR4_PIG Toll-like receptor ( 841) 3973 871.0 0 gi|57117173|gb|AAT05612.1| toll-like receptor 4 [S ( 824) 3958 867.8 0 gi|21429692|gb|AAM50060.1| toll-like receptor 4 [O ( 839) 3837 841.6 0 gi|20140920|sp|Q9WV82|TLR4_CRIGR Toll-like recepto ( 838) 3788 831.0 0 gi|115383372|gb|ABI96901.1| Toll-like receptor 4 [ ( 755) 3737 819.9 0 gi|53854317|gb|AAU95608.1| toll-like receptor 4 [E ( 724) 3720 816.2 0 gi|20988279|gb|AAH29856.1| Toll-like receptor 4 [M ( 835) 3597 789.6 0 gi|20140894|sp|Q9QUK6.1|TLR4_MOUSE Toll-like recep ( 835) 3591 788.3 0 gi|74178484|dbj|BAE32498.1| unnamed protein produc ( 835) 3590 788.0 0 gi|6120054|gb|AAF04278.1|AF185285_1 Toll-like rece ( 835) 3588 787.6 0 gi|20140357|sp|Q9QX05.1|TLR4_RAT Toll-like recepto ( 835) 3581 786.1 0 gi|149059567|gb|EDM10505.1| toll-like receptor 4 [ ( 835) 3580 785.9 0 gi|4092077|gb|AAC99411.1| toll-like receptor 4 mut ( 835) 3579 785.7 0 >>gi|20140413|sp|O00206|TLR4_HUMAN Toll-like receptor 4 (839 aa) initn: 5333 init1: 5333 opt: 5333 Z-score: 6240.8 bits: 1165.8 E(): 0 Smith-Waterman score: 5333; 100.000% identity (100.000% similar) in 809 aa overlap (36-844:31-839) 10 20 30 40 50 60 sj0345 WHETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLD :::::::::::::::::::::::::::::: gi|201 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 10 20 30 40 50 60 70 80 90 100 110 120 sj0345 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 70 80 90 100 110 120 130 140 150 160 170 180 sj0345 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 130 140 150 160 170 180 190 200 210 220 230 240 sj0345 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 190 200 210 220 230 240 250 260 270 280 290 300 sj0345 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 250 260 270 280 290 300 310 320 330 340 350 360 sj0345 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 310 320 330 340 350 360 370 380 390 400 410 420 sj0345 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 370 380 390 400 410 420 430 440 450 460 470 480 sj0345 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 430 440 450 460 470 480 490 500 510 520 530 540 sj0345 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 490 500 510 520 530 540 550 560 570 580 590 600 sj0345 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 550 560 570 580 590 600 610 620 630 640 650 660 sj0345 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML 610 620 630 640 650 660 670 680 690 700 710 720 sj0345 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA 670 680 690 700 710 720 730 740 750 760 770 780 sj0345 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR 730 740 750 760 770 780 790 800 810 820 830 840 sj0345 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 790 800 810 820 830 >>gi|20140908|sp|Q9TTN0.1|TLR4_PANPA Toll-like receptor (839 aa) initn: 5314 init1: 5314 opt: 5314 Z-score: 6218.5 bits: 1161.6 E(): 0 Smith-Waterman score: 5314; 99.629% identity (99.876% similar) in 809 aa overlap (36-844:31-839) 10 20 30 40 50 60 sj0345 WHETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLD :::::::::::::::::::::::::::::: gi|201 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 10 20 30 40 50 60 70 80 90 100 110 120 sj0345 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 70 80 90 100 110 120 130 140 150 160 170 180 sj0345 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 130 140 150 160 170 180 190 200 210 220 230 240 sj0345 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 190 200 210 220 230 240 250 260 270 280 290 300 sj0345 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 250 260 270 280 290 300 310 320 330 340 350 360 sj0345 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS ::::::::::::::::::::. :::::::::::::::::::::::::::::::::::::: gi|201 IDLFNCLTNVSSFSLVSVTIKSVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 310 320 330 340 350 360 370 380 390 400 410 420 sj0345 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 370 380 390 400 410 420 430 440 450 460 470 480 sj0345 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 430 440 450 460 470 480 490 500 510 520 530 540 sj0345 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 490 500 510 520 530 540 550 560 570 580 590 600 sj0345 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 550 560 570 580 590 600 610 620 630 640 650 660 sj0345 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML 610 620 630 640 650 660 670 680 690 700 710 720 sj0345 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA 670 680 690 700 710 720 730 740 750 760 770 780 sj0345 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR 730 740 750 760 770 780 790 800 810 820 830 840 sj0345 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|201 RQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 790 800 810 820 830 >>gi|114626378|ref|XP_001146983.1| PREDICTED: similar to (998 aa) initn: 5311 init1: 5311 opt: 5311 Z-score: 6214.0 bits: 1161.1 E(): 0 Smith-Waterman score: 5311; 99.506% identity (99.876% similar) in 809 aa overlap (36-844:190-998) 10 20 30 40 50 60 sj0345 WHETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLD :::::::::::::::::::::::::::::: gi|114 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 160 170 180 190 200 210 70 80 90 100 110 120 sj0345 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 220 230 240 250 260 270 130 140 150 160 170 180 sj0345 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 280 290 300 310 320 330 190 200 210 220 230 240 sj0345 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 340 350 360 370 380 390 250 260 270 280 290 300 sj0345 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|114 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTMEEFRLAYLDYYLDDI 400 410 420 430 440 450 310 320 330 340 350 360 sj0345 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS ::::::::::::::::::::. :::::::::::::::::::::::::::::::::::::: gi|114 IDLFNCLTNVSSFSLVSVTIKSVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 460 470 480 490 500 510 370 380 390 400 410 420 sj0345 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 520 530 540 550 560 570 430 440 450 460 470 480 sj0345 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 580 590 600 610 620 630 490 500 510 520 530 540 sj0345 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 640 650 660 670 680 690 550 560 570 580 590 600 sj0345 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 700 710 720 730 740 750 610 620 630 640 650 660 sj0345 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML 760 770 780 790 800 810 670 680 690 700 710 720 sj0345 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA 820 830 840 850 860 870 730 740 750 760 770 780 sj0345 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR 880 890 900 910 920 930 790 800 810 820 830 840 sj0345 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 940 950 960 970 980 990 >>gi|194068435|dbj|BAG55038.1| toll-like receptor 4 [Gor (839 aa) initn: 5301 init1: 5301 opt: 5301 Z-score: 6203.3 bits: 1158.8 E(): 0 Smith-Waterman score: 5301; 99.382% identity (100.000% similar) in 809 aa overlap (36-844:31-839) 10 20 30 40 50 60 sj0345 WHETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLD :::::::::::::::::::::::::::::: gi|194 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 10 20 30 40 50 60 70 80 90 100 110 120 sj0345 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 70 80 90 100 110 120 130 140 150 160 170 180 sj0345 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|194 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEYL 130 140 150 160 170 180 190 200 210 220 230 240 sj0345 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|194 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMTFIQPGAFKEIRLHKLTLRNNFDSL 190 200 210 220 230 240 250 260 270 280 290 300 sj0345 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|194 NVMKTCIQGLAGLEVRRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 250 260 270 280 290 300 310 320 330 340 350 360 sj0345 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 310 320 330 340 350 360 370 380 390 400 410 420 sj0345 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 370 380 390 400 410 420 430 440 450 460 470 480 sj0345 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 430 440 450 460 470 480 490 500 510 520 530 540 sj0345 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 490 500 510 520 530 540 550 560 570 580 590 600 sj0345 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KCLNSLRVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 550 560 570 580 590 600 610 620 630 640 650 660 sj0345 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML 610 620 630 640 650 660 670 680 690 700 710 720 sj0345 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LAGCIKYGRGENVYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA 670 680 690 700 710 720 730 740 750 760 770 780 sj0345 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR 730 740 750 760 770 780 790 800 810 820 830 840 sj0345 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 790 800 810 820 830 >>gi|194068433|dbj|BAG55037.1| toll-like receptor 4 [Pan (839 aa) initn: 5296 init1: 5296 opt: 5296 Z-score: 6197.4 bits: 1157.7 E(): 0 Smith-Waterman score: 5296; 99.382% identity (99.753% similar) in 809 aa overlap (36-844:31-839) 10 20 30 40 50 60 sj0345 WHETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLD :::::::::::::::::::::::::::::: gi|194 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 10 20 30 40 50 60 70 80 90 100 110 120 sj0345 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 70 80 90 100 110 120 130 140 150 160 170 180 sj0345 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 130 140 150 160 170 180 190 200 210 220 230 240 sj0345 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL 190 200 210 220 230 240 250 260 270 280 290 300 sj0345 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|194 NVMKTCIQGLAGLEVHRLVLGEFRNEENLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 250 260 270 280 290 300 310 320 330 340 350 360 sj0345 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS ::::::::::::::::::::. ::::::::::::::::.::::::::::::::::::::: gi|194 IDLFNCLTNVSSFSLVSVTIKSVKDFSYNFGWQHLELVKCKFGQFPTLKLKSLKRLTFTS 310 320 330 340 350 360 370 380 390 400 410 420 sj0345 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 370 380 390 400 410 420 430 440 450 460 470 480 sj0345 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 430 440 450 460 470 480 490 500 510 520 530 540 sj0345 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 490 500 510 520 530 540 550 560 570 580 590 600 sj0345 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 550 560 570 580 590 600 610 620 630 640 650 660 sj0345 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML 610 620 630 640 650 660 670 680 690 700 710 720 sj0345 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA 670 680 690 700 710 720 730 740 750 760 770 780 sj0345 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR 730 740 750 760 770 780 790 800 810 820 830 840 sj0345 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 790 800 810 820 830 >>gi|62287777|sp|Q8SPE8|TLR4_GORGO Toll-like receptor 4 (837 aa) initn: 5295 init1: 5295 opt: 5295 Z-score: 6196.3 bits: 1157.5 E(): 0 Smith-Waterman score: 5295; 99.381% identity (100.000% similar) in 808 aa overlap (37-844:30-837) 10 20 30 40 50 60 sj0345 HETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLDL :::::::::::::::::::::::::::::: gi|622 MMSASRLAGTLIPAMAFLSCVRPESWEPCVVPNITYQCMELNFYKIPDNLPFSTKNLDL 10 20 30 40 50 70 80 90 100 110 120 sj0345 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 60 70 80 90 100 110 130 140 150 160 170 180 sj0345 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|622 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEYLD 120 130 140 150 160 170 190 200 210 220 230 240 sj0345 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|622 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMTFIQPGAFKEIRLHKLTLRNNFDSLN 180 190 200 210 220 230 250 260 270 280 290 300 sj0345 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|622 VMKTCIQGLAGLEVRRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII 240 250 260 270 280 290 310 320 330 340 350 360 sj0345 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN 300 310 320 330 340 350 370 380 390 400 410 420 sj0345 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 360 370 380 390 400 410 430 440 450 460 470 480 sj0345 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 420 430 440 450 460 470 490 500 510 520 530 540 sj0345 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 480 490 500 510 520 530 550 560 570 580 590 600 sj0345 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 CLNSLRVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 540 550 560 570 580 590 610 620 630 640 650 660 sj0345 VEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 VEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLL 600 610 620 630 640 650 670 680 690 700 710 720 sj0345 AGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAAN :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|622 AGCIKYGRGENVYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAAN 660 670 680 690 700 710 730 740 750 760 770 780 sj0345 IIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 IIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQ 720 730 740 750 760 770 790 800 810 820 830 840 sj0345 QVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|622 QVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 780 790 800 810 820 830 >>gi|2459628|gb|AAC34135.1| Toll-like receptor 4 [Homo s (799 aa) initn: 5262 init1: 5262 opt: 5262 Z-score: 6157.9 bits: 1150.4 E(): 0 Smith-Waterman score: 5262; 100.000% identity (100.000% similar) in 799 aa overlap (46-844:1-799) 20 30 40 50 60 70 sj0345 EPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLG :::::::::::::::::::::::::::::: gi|245 MELNFYKIPDNLPFSTKNLDLSFNPLRHLG 10 20 30 80 90 100 110 120 130 sj0345 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 40 50 60 70 80 90 140 150 160 170 180 190 sj0345 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 100 110 120 130 140 150 200 210 220 230 240 250 sj0345 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 160 170 180 190 200 210 260 270 280 290 300 310 sj0345 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 220 230 240 250 260 270 320 330 340 350 360 370 sj0345 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 280 290 300 310 320 330 380 390 400 410 420 430 sj0345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 340 350 360 370 380 390 440 450 460 470 480 490 sj0345 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 400 410 420 430 440 450 500 510 520 530 540 550 sj0345 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 460 470 480 490 500 510 560 570 580 590 600 610 sj0345 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 520 530 540 550 560 570 620 630 640 650 660 670 sj0345 TPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLLAGCIKYGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 TPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLLAGCIKYGRG 580 590 600 610 620 630 680 690 700 710 720 730 sj0345 ENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 ENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKS 640 650 660 670 680 690 740 750 760 770 780 790 sj0345 RKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 RKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRLLS 700 710 720 730 740 750 800 810 820 830 840 sj0345 RNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI ::::::::::::::::::::::::::::::::::::::::::::::::: gi|245 RNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 760 770 780 790 >>gi|158261129|dbj|BAF82742.1| unnamed protein product [ (799 aa) initn: 5256 init1: 5256 opt: 5256 Z-score: 6150.9 bits: 1149.1 E(): 0 Smith-Waterman score: 5256; 99.875% identity (99.875% similar) in 799 aa overlap (46-844:1-799) 20 30 40 50 60 70 sj0345 EPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLG :::::::::::::::::::::::::::::: gi|158 MELNFYKIPDNLPFSTKNLDLSFNPLRHLG 10 20 30 80 90 100 110 120 130 sj0345 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 40 50 60 70 80 90 140 150 160 170 180 190 sj0345 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 100 110 120 130 140 150 200 210 220 230 240 250 sj0345 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 160 170 180 190 200 210 260 270 280 290 300 310 sj0345 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 220 230 240 250 260 270 320 330 340 350 360 370 sj0345 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 280 290 300 310 320 330 380 390 400 410 420 430 sj0345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|158 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTCLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 340 350 360 370 380 390 440 450 460 470 480 490 sj0345 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 400 410 420 430 440 450 500 510 520 530 540 550 sj0345 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 460 470 480 490 500 510 560 570 580 590 600 610 sj0345 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 520 530 540 550 560 570 620 630 640 650 660 670 sj0345 TPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLLAGCIKYGRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 TPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLLAGCIKYGRG 580 590 600 610 620 630 680 690 700 710 720 730 sj0345 ENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKS 640 650 660 670 680 690 740 750 760 770 780 790 sj0345 RKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRLLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 RKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRLLS 700 710 720 730 740 750 800 810 820 830 840 sj0345 RNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI ::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 RNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI 760 770 780 790 >>gi|194068437|dbj|BAG55039.1| toll-like receptor 4 [Pon (830 aa) initn: 5151 init1: 5151 opt: 5151 Z-score: 6027.7 bits: 1126.3 E(): 0 Smith-Waterman score: 5151; 97.625% identity (99.125% similar) in 800 aa overlap (36-835:31-830) 10 20 30 40 50 60 sj0345 WHETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLD :::::::::::::::::::::::::::::: gi|194 MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 10 20 30 40 50 60 70 80 90 100 110 120 sj0345 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|194 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQNLALG 70 80 90 100 110 120 130 140 150 160 170 180 sj0345 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 130 140 150 160 170 180 190 200 210 220 230 240 sj0345 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL :::::::::::: ::.::::::::::::::::: :::::::::::::::::::::.:::: gi|194 DLSSNKIQSIYCKDLQVLHQMPLLNLSLDLSLNAMNFIQPGAFKEIRLHKLTLRNSFDSL 190 200 210 220 230 240 250 260 270 280 290 300 sj0345 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI ::::::::::::::::.::::::::: :::::: :::::::::::::::::::::::::: gi|194 NVMKTCIQGLAGLEVHHLVLGEFRNEKNLEKFDTSALEGLCNLTIEEFRLAYLDYYLDDI 250 260 270 280 290 300 310 320 330 340 350 360 sj0345 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS :::::::.::::::::::::. ::::::::::::::::::::::::::.::::::::::. gi|194 IDLFNCLANVSSFSLVSVTIKSVKDFSYNFGWQHLELVNCKFGQFPTLELKSLKRLTFTA 310 320 330 340 350 360 370 380 390 400 410 420 sj0345 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG ::::::::::::::::::::::::::::::::::::::::::::::::: ::::.::::: gi|194 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNDVITMGSNFLG 370 380 390 400 410 420 430 440 450 460 470 480 sj0345 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|194 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLKVLKMAG 430 440 450 460 470 480 490 500 510 520 530 540 sj0345 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 490 500 510 520 530 540 550 560 570 580 590 600 sj0345 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 550 560 570 580 590 600 610 620 630 640 650 660 sj0345 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML ::::::::::::::::::::::::::::::::.:::::.::::::::::::::::::::: gi|194 LVEVERMECATPSDKQGMPVLSLNITCQMNKTVIGVSVFSVLVVSVVAVLVYKFYFHLML 610 620 630 640 650 660 670 680 690 700 710 720 sj0345 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LAGCIKYGRGENTYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA 670 680 690 700 710 720 730 740 750 760 770 780 sj0345 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR 730 740 750 760 770 780 790 800 810 820 830 840 sj0345 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI :::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTG 790 800 810 820 830 >>gi|184132924|gb|ACC68078.1| toll-like receptor 4 [Hylo (832 aa) initn: 5147 init1: 5147 opt: 5147 Z-score: 6023.0 bits: 1125.5 E(): 0 Smith-Waterman score: 5147; 97.257% identity (99.377% similar) in 802 aa overlap (36-837:31-832) 10 20 30 40 50 60 sj0345 WHETQSFQTPEPQPFTPIPLLLAKCCRFITEVVPNITYQCMELNFYKIPDNLPFSTKNLD :::::::::::::::::::::::::::::: gi|184 MMSASRLAGTLIPAMAFLSCVRPESWDPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLD 10 20 30 40 50 60 70 80 90 100 110 120 sj0345 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|184 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSLLSTLILTGNPIQSLALG 70 80 90 100 110 120 130 140 150 160 170 180 sj0345 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 130 140 150 160 170 180 190 200 210 220 230 240 sj0345 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSL :::::::::::: ::.:::::::::::::::::::::::::::::: :.::::::::::: gi|184 DLSSNKIQSIYCKDLQVLHQMPLLNLSLDLSLNPMNFIQPGAFKEISLRKLTLRNNFDSL 190 200 210 220 230 240 250 260 270 280 290 300 sj0345 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI ::::::::::::::::::::::::::::::.:::::::::::::::::::::::.::::: gi|184 NVMKTCIQGLAGLEVHRLVLGEFRNEGNLEEFDKSALEGLCNLTIEEFRLAYLDHYLDDI 250 260 270 280 290 300 310 320 330 340 350 360 sj0345 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS :::::::.::::::::::::.::.::::::::::::::::::::::::.::::::::::. gi|184 IDLFNCLANVSSFSLVSVTIKRVEDFSYNFGWQHLELVNCKFGQFPTLNLKSLKRLTFTA 310 320 330 340 350 360 370 380 390 400 410 420 sj0345 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG :.::::::::::::::::::::::::::::::::::::.:::::::::: :::::::::: gi|184 NRGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTNSLKYLDLSFNDVITMSSNFLG 370 380 390 400 410 420 430 440 450 460 470 480 sj0345 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG ::::::::.::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|184 LEQLEHLDLQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSNLEVLKMAG 430 440 450 460 470 480 490 500 510 520 530 540 sj0345 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 490 500 510 520 530 540 550 560 570 580 590 600 sj0345 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL :::::::::::::::::::::::::.:::::::::::::::::::::.:::::::::::: gi|184 KCLNSLQVLDYSLNHIMTSKKQELQRFPSSLAFLNLTQNDFACTCEHESFLQWIKDQRQL 550 560 570 580 590 600 610 620 630 640 650 660 sj0345 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 LVEVERMECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLML 610 620 630 640 650 660 670 680 690 700 710 720 sj0345 LAGCIKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA ::::.::::::: ::::::::::::::::::::::::::::::::::::::::::::::: gi|184 LAGCMKYGRGENTYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAA 670 680 690 700 710 720 730 740 750 760 770 780 sj0345 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: gi|184 NIIHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSHAGIIFIVLQKVEKTLLR 730 740 750 760 770 780 790 800 810 820 830 840 sj0345 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCN 790 800 810 820 830 844 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 20:00:10 2008 done: Wed Aug 13 20:02:07 2008 Total Scan time: 1007.160 Total Display time: 0.430 Function used was FASTA [version 34.26.5 April 26, 2007]