hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18314903/chunk_1/iprscan-20090618-18314903.nocrc
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Query sequence: sj03569
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00028.8.fs Cadherin domain                                 22.2    9.7e-06   2
PF00028.8.ls Cadherin domain                                 21.9     0.0021   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00028.8.ls   1/2     115   218 ..     1   107 []     8.8    0.027
PF00028.8.ls   2/2     232   321 ..     1   107 []    13.1    0.012

Alignments of top-scoring domains:
PF00028.8.ls: domain 1 of 2, from 115 to 218: score 8.8, E = 0.027
                   *->ysasvpEnapvGtevlt..vtAtDaDdPlgpNgri.rYsilggnp.g
                      y++ v+En   +t +l++++ A D+D Pl   g i  +++ g +++ 
     sj03569   115    YQGIVMEN--DNTVLLNppLFALDKDAPLRYAGEIcGFRLHGSGVpF 159  

                   gwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtDad..pllasg
                       +d++tG+  g+i+ ++p+D+E++   e+++t+ A D++++p+   g
     sj03569   160 EAVILDKATGE--GLIRAKEPVDCEAQ--KEHTFTIQAYDCGegPD---G 202  

                   ggpplsstatvtitVl<-*
                   + + +s  atv++ V    
     sj03569   203 ANTKKSHKATVHVRVN    218  

PF00028.8.ls: domain 2 of 2, from 232 to 321: score 13.1, E = 0.012
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr
                      y a v E+     ++l+v A+D D  +++ ++i Y  + ++ +  F 
     sj03569   232    YRAAVTEGKL-YDRILRVEAIDGDC-SPQYSQICYYEILTP-NTPFL 275  

                   IdpdtGdnegiisttkpLDREeif.ngeYeLtveAtDadpllasgggppl
                   Id  +G     i  t+ L +   ++++ Y +tv A D+       g +  
     sj03569   276 IDN-DGN----IENTEKLQY---SgERLYKFTVTAYDC-------GKKRA 310  

                   sstatvtitVl<-*
                    + a+v i+V    
     sj03569   311 ADDAEVEIQVK    321  

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