hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18314903/chunk_1/iprscan-20090618-18314903.nocrc
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Query sequence: sj03569
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                  72.9    4.1e-17   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/2     132   225 ..     1   121 []    56.9  2.6e-12
SM00112    2/2     248   326 ..     1   121 []    16.0    0.065

Alignments of top-scoring domains:
SM00112: domain 1 of 2, from 132 to 225: score 56.9, E = 2.6e-12
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.............lFsId
                      + A D+D++             ++Y  +  + + ++++ + +   +d
     sj03569   132    LFALDKDAP-------------LRYAGEIcgfrlhgsgvpfeAVILD 165  

                   petGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgG
                   + tG         e+ i++++p D E+q         +e+t+t++A D G
     sj03569   166 KATG---------EGLIRAKEPVDCEAQ---------KEHTFTIQAYDCG 197  

                   gpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                   + p g++ +         +s  atv+v+V DvN+ aP   
     sj03569   198 EGPDGANTK---------KSHKATVHVRVNDVNEFAP    225  

SM00112: domain 2 of 2, from 248 to 326: score 16.0, E = 0.065
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
                      v A+D D     + ++     +  Y+il ++++F Id ++       
     sj03569   248    VEAIDGDCS--PQYSQ-----ICYYEILTpntPFLIDNDGN------ 281  

                   vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                         i  t+ L +              Y +tv+A D G  +       
     sj03569   282 ------IENTEKLQYSGE---------RLYKFTVTAYDCGKKR------- 309  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                             + a+v ++V+      P   
     sj03569   310 --------AADDAEVEIQVKP--TCKP    326  

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