hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-20243021/chunk_1/iprscan-20080813-20243021.nocrc
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Query sequence: sj04505
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02181.13.ls Formin Homology 2 Domain                       419.6   4.2e-123   1
PF02181.13.fs Formin Homology 2 Domain                       417.6   1.6e-122   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02181.13.fs   1/1     470   841 ..     1   413 []   417.6 1.6e-122
PF02181.13.ls   1/1     470   841 ..     1   413 []   419.6 4.2e-123

Alignments of top-scoring domains:
PF02181.13.fs: domain 1 of 1, from 470 to 841: score 417.6, E = 1.6e-122
                   *->kkepkpkkkLKpLhWdKlnpsqdrgt.........svWdkldeesfe
                       ++ ++k+k+ +L+W  l+ + ++g + ++ ++  ++W+ ld     
     sj04505   470    SSALPTKRKTVKLFWRELKLAGGHGVsasrfgpcaTLWASLDPV--- 513  

                   kkldldlselEelFsakakkkkekksseksskskkkkkeisvLDpkrsQN
                       +d+++lE+lF+++ak+ + +k     ++ + +++ ++vLDpkrs++
     sj04505   514 ---SVDTARLEHLFESRAKEVLPSK-----KAGEGRRTMTTVLDPKRSNA 555  

                   iaIlLrklsklppeeivqailemDedvLgvvlflkemldllenLlkmaPt
                   i+I L+ l  +p+  i++a+l++De +++        +d++e+Ll+m+Pt
     sj04505   556 INIGLTTL--PPVHVIKAALLNFDEFAVS--------KDGIEKLLTMMPT 595  

                   keElkklqekeykgdekspskLgraEqqFLlelskliprleeRlrallFk
                   +eE++k++e+++ ++   +++Lg+aE  FL++l + i  l +Rl++++Fk
     sj04505   596 EEERQKIEEAQLANP---DIPLGPAE-NFLMTLAS-IGGLAARLQLWAFK 640  

                   stFeeeveelkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrr
                   ++++++++e++++l +l+ ++e+L ++ +f+++L ++La+GN++N+    
     sj04505   641 LDYDSMEREIAEPLFDLKVGMEQLVQNATFRCILATLLAVGNFLNG---- 686  

                   rGnAkGFkLssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKL
                     +  GF+Ls+L K+s+vK+t +++++LLH+l+ ++ +            
     sj04505   687 -SQSSGFELSYLEKVSEVKDT-VRRQSLLHHLCSLVLQ------------ 722  

                   klpelldfsseLshVekAakvdleeLeadvkeLekglkklekelelseeS
                     pe +d++se+++++++akvd+e+L++++ +Le++ +++e++l++ ++ 
     sj04505   723 TRPESSDLYSEIPALTRCAKVDFEQLTENLGQLERRSRAAEESLRSLAK- 771  

                   kvsdeepsdkFvevmkeFleeAeekldkLesllkeakelfkelteYFghg
                       +e  + ++ +++ Fl++++ +++ L++ +++++++f+ +++Y+g+ 
     sj04505   772 ----HELAPALRARLTHFLDQCARRVAMLRIVHRRVCNRFHAFLLYLGYT 817  

                   gedpkdetspeeFFkilrdFlnefk<-*
                   + + + e+++++F+ +lr+F++e++   
     sj04505   818 PQAAR-EVRIMQFCHTLREFALEYR    841  

PF02181.13.ls: domain 1 of 1, from 470 to 841: score 419.6, E = 4.2e-123
                   *->kkepkpkkkLKpLhWdKlnpsqdrgt.........svWdkldeesfe
                       ++ ++k+k+ +L+W  l+ + ++g + ++ ++  ++W+ ld     
     sj04505   470    SSALPTKRKTVKLFWRELKLAGGHGVsasrfgpcaTLWASLDPV--- 513  

                   kkldldlselEelFsakakkkkekksseksskskkkkkeisvLDpkrsQN
                       +d+++lE+lF+++ak+ + +k     ++ + +++ ++vLDpkrs++
     sj04505   514 ---SVDTARLEHLFESRAKEVLPSK-----KAGEGRRTMTTVLDPKRSNA 555  

                   iaIlLrklsklppeeivqailemDedvLgvvlflkemldllenLlkmaPt
                   i+I L+ l  +p+  i++a+l++De +++        +d++e+Ll+m+Pt
     sj04505   556 INIGLTTL--PPVHVIKAALLNFDEFAVS--------KDGIEKLLTMMPT 595  

                   keElkklqekeykgdekspskLgraEqqFLlelskliprleeRlrallFk
                   +eE++k++e+++ ++   +++Lg+aE  FL++l + i  l +Rl++++Fk
     sj04505   596 EEERQKIEEAQLANP---DIPLGPAE-NFLMTLAS-IGGLAARLQLWAFK 640  

                   stFeeeveelkpsletleaAseeLreSrkfkklLeliLalGNyMNsGtrr
                   ++++++++e++++l +l+ ++e+L ++ +f+++L ++La+GN++N+    
     sj04505   641 LDYDSMEREIAEPLFDLKVGMEQLVQNATFRCILATLLAVGNFLNG---- 686  

                   rGnAkGFkLssLlKLsdvKstidnktTLLHflvkeieesEGkrlEeyrKL
                     +  GF+Ls+L K+s+vK+t +++++LLH+l+ ++ +            
     sj04505   687 -SQSSGFELSYLEKVSEVKDT-VRRQSLLHHLCSLVLQ------------ 722  

                   klpelldfsseLshVekAakvdleeLeadvkeLekglkklekelelseeS
                     pe +d++se+++++++akvd+e+L++++ +Le++ +++e++l++ ++ 
     sj04505   723 TRPESSDLYSEIPALTRCAKVDFEQLTENLGQLERRSRAAEESLRSLAK- 771  

                   kvsdeepsdkFvevmkeFleeAeekldkLesllkeakelfkelteYFghg
                       +e  + ++ +++ Fl++++ +++ L++ +++++++f+ +++Y+g+ 
     sj04505   772 ----HELAPALRARLTHFLDQCARRVAMLRIVHRRVCNRFHAFLLYLGYT 817  

                   gedpkdetspeeFFkilrdFlnefk<-*
                   + + + e+++++F+ +lr+F++e++   
     sj04505   818 PQAAR-EVRIMQFCHTLREFALEYR    841  

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