hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-20243021/chunk_1/iprscan-20080813-20243021.nocrc
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Query sequence: sj04505
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00498                                                 463.5     1e-134   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00498      1/1     469   921 ..     1   499 []   463.5   1e-134

Alignments of top-scoring domains:
SM00498: domain 1 of 1, from 469 to 921: score 463.5, E = 1e-134
                   *->pkkepkpkkkLKqLhWdklnsl.rssrqApsNPseisegtvWettvn
                        ++ ++k+k  +L+W+ l+++++++++A    ++ +++t+W     
     sj04505   469    DSSALPTKRKTVKLFWRELKLAgGHGVSA---SRFGPCATLW----- 507  

                   dkldeekfLynnldldeleelFaakektkkakkrsvsekksklkkkkvqq
                   ++ld +     ++d+++le+lF++++k+++++k   ++++        ++
     sj04505   508 ASLDPV-----SVDTARLEHLFESRAKEVLPSK---KAGE------GRRT 543  

                   nlkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvdll
                   ++++lDpkrs++  ++I l++l   ++ +   ik+a+l++De+++s+d +
     sj04505   544 MTTVLDPKRSNA--INIGLTTL---PPVHV--IKAALLNFDEFAVSKDGI 586  

                   eqLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLipy
                   e+Ll+++P   t+ee++k++e++ ++  ++++L++ae+ Fl+++++ i++
     sj04505   587 EKLLTMMP---TEEERQKIEEAQLAN--PDIPLGPAEN-FLMTLAS-IGG 629  

                   leeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeliLa
                   l++Rl++++fk+ ++++ +++ + l  ++ ++e+L ++  Fr++L+ +La
     sj04505   630 LAARLQLWAFKLDYDSMEREIAEPLFDLKVGMEQLVQNATFRCILATLLA 679  

                   iGNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiirkk
                   +GN++N      ++q++GF+Ls+L k s vK++ ++++LLH+l+ ++++ 
     sj04505   680 VGNFLN------GSQSSGFELSYLEKVSEVKDTVRRQSLLHHLCSLVLQT 723  

                   ypdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsdpe
                   +p+  ++ys+++++++++kv++eql+++++qler+++++E +++ L ++e
     sj04505   724 RPESSDLYSEIPALTRCAKVDFEQLTENLGQLERRSRAAEESLRSLAKHE 773  

                   ghpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpkd.
                     p   + +++t+Fl+++++++++L+ ++r+ ++rf+++  y+g+ p++ 
     sj04505   774 LAP--ALRARLTHFLDQCARRVAMLRIVHRRVCNRFHAFLLYLGYTPQAa 821  

                   rdvspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalrv
                   r+v++++F+++++eF+ e+  ++e++l   +++++++++++r+k +    
     sj04505   822 REVRIMQFCHTLREFALEYRTCRERVL---QQQQKQATYRERNKTRG--- 865  

                   ketteyeqssskqkeneerrvernplmdfev.......erdflgvldsll
                   +++te+e++s +++e++     +np++ ++v+++++++ +d +++++sll
     sj04505   866 RMITETEKFSGVAGEAP-----SNPSVPVAVssgpgrgDADSHASMKSLL 910  

                   kelrtdssfer<-*
                    +   d +++r   
     sj04505   911 TSRPEDTTHNR    921  

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