hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-20301755/chunk_1/iprscan-20080813-20301755.nocrc
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Query sequence: sj04913
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00017.14.fs SH2 domain                                      58.7    1.3e-19   1
PF00017.14.ls SH2 domain                                      60.6    4.7e-15   1
PF00169.19.fs PH domain                                       28.5    3.1e-08   1
PF00169.19.ls PH domain                                       30.6    5.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      58   171 ..     1    92 []    28.5  3.1e-08
PF00169.19.ls   1/1      58   171 ..     1    92 []    30.6  5.2e-06
PF00017.14.fs   1/1     228   305 ..     1    82 []    58.7  1.3e-19
PF00017.14.ls   1/1     228   305 ..     1    82 []    60.6  4.7e-15

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 58 to 171: score 28.5, E = 3.1e-08
                   *->vikeGwLlkkg........gkkswkkRyfvLfd........dvLlyy
                         +  +l+++  ++ + +++ +w++  + L++ ++++++++vL+++
     sj04913    58    EALKEAVLRYSladeasmdSGARWQRGRLALRRapgpdgpdRVLELF 104  

                   kdkk.kkpkgsipLsgi.qvtkvpdn...krkncFeirt.dretlllqae
                   +++k+++pk     s+i++v+++++ + +++ ++F+++ +dr+ ++++  
     sj04913   105 DPPKsSRPKLQAACSSIqEVRRCTRLempDNLYTFVLKVkDRTDIIFEVG 154  

                   seeerkeWvkaiqsair<-*
                   +e+++++W++ ++++     
     sj04913   155 DEQQLNSWMAELSECTG    171  

PF00169.19.ls: domain 1 of 1, from 58 to 171: score 30.6, E = 5.2e-06
                   *->vikeGwLlkkg........gkkswkkRyfvLfd........dvLlyy
                         +  +l+++  ++ + +++ +w++  + L++ ++++++++vL+++
     sj04913    58    EALKEAVLRYSladeasmdSGARWQRGRLALRRapgpdgpdRVLELF 104  

                   kdkk.kkpkgsipLsgi.qvtkvpdn...krkncFeirt.dretlllqae
                   +++k+++pk     s+i++v+++++ + +++ ++F+++ +dr+ ++++  
     sj04913   105 DPPKsSRPKLQAACSSIqEVRRCTRLempDNLYTFVLKVkDRTDIIFEVG 154  

                   seeerkeWvkaiqsair<-*
                   +e+++++W++ ++++     
     sj04913   155 DEQQLNSWMAELSECTG    171  

PF00017.14.fs: domain 1 of 1, from 228 to 305: score 58.7, E = 1.3e-19
                   *->WyhGkIsRkeAErlLlnpggkd..GtFLvReSestpGdYtLSVrddg
                      W+hG+IsR +A +l +  +g+d +G FLvR+Se+  G+Y+L++ ++g
     sj04913   228    WFHGPISRVKAAQLVQL-QGPDahGVFLVRQSETRRGEYVLTFNFQG 273  

                   pqgdrVkHyrIqsldnggyyitggvkFssLpeLvehY<-*
                         kH r   +++g  ++     F+s+ ++ +h+   
     sj04913   274 ----IAKHLRLSLTERG-QCRVQHLHFPSVVDMLHHF    305  

PF00017.14.ls: domain 1 of 1, from 228 to 305: score 60.6, E = 4.7e-15
                   *->WyhGkIsRkeAErlLlnpggkd..GtFLvReSestpGdYtLSVrddg
                      W+hG+IsR +A +l +  +g+d +G FLvR+Se+  G+Y+L++ ++g
     sj04913   228    WFHGPISRVKAAQLVQL-QGPDahGVFLVRQSETRRGEYVLTFNFQG 273  

                   pqgdrVkHyrIqsldnggyyitggvkFssLpeLvehY<-*
                         kH r   +++g  ++     F+s+ ++ +h+   
     sj04913   274 ----IAKHLRLSLTERG-QCRVQHLHFPSVVDMLHHF    305  

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