hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-20301755/chunk_1/iprscan-20080813-20301755.nocrc
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Query sequence: sj04913
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00252                                                  83.9      2e-20   1
SM00233                                                  28.8    0.00077   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      59   173 ..     1    82 []    28.8  0.00077
SM00252     1/1     226   311 ..     1    87 []    83.9    2e-20

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 59 to 173: score 28.8, E = 0.00077
                   *->vikeGwLlkks........k.swkkryfvLfn........gvLlyyk
                       +ke  L+    +  + +++ +w++  + L++ ++++++++vL +++
     sj04913    59    ALKEAVLRYSLadeasmdsGaRWQRGRLALRRapgpdgpdRVLELFD 105  

                   sk...kpkgsipLsgc.svre.p.........cFeivt.dr.tlllqAes
                   ++++++pk     s++++vr+ ++ + +++  +F ++ +dr+ +++   +
     sj04913   106 PPkssRPKLQAACSSIqEVRRcTrlempdnlyTFVLKVkDRtDIIFEVGD 155  

                   eeereeWvealqsaiaka<-*
                   e+++++W++ l +++ +    
     sj04913   156 EQQLNSWMAELSECTGRG    173  

SM00252: domain 1 of 1, from 226 to 311: score 83.9, E = 2e-20
                   *->epWYHGkisReeAEklLkne.ggpdGtFLvRdSesspgdyvLSvrvk
                      +pW+HG+isR +A +l + ++   +G FLvR+Se+ +g+yvL++ ++
     sj04913   226    YPWFHGPISRVKAAQLVQLQgPDAHGVFLVRQSETRRGEYVLTFNFQ 272  

                   gkvkHyrIrrtddgkfylggtprrkFpsL.eLvehYqknslg<-*
                   g  kH r+  t+ g+ +++      Fps+ ++++h+q+ +++   
     sj04913   273 GIAKHLRLSLTERGQCRVQH---LHFPSVvDMLHHFQRSPIP    311  

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