hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080813/iprscan-20080813-20364719/chunk_1/iprscan-20080813-20364719.nocrc
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Query sequence: sj05239
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00227.16.fs Proteasome A-type and B-type                  37.1      2e-10   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00227.16.fs   1/1       5    68 ..   105   170 ..    37.1    2e-10

Alignments of top-scoring domains:
PF00227.16.fs: domain 1 of 1, from 5 to 68: score 37.1, E = 2e-10
                   *->fgvslliaGyDekggPhLyqiDpsGsyieyKdnatAiGgSGsqyAyg
                      +  +++++G+De+ gP++y++Dp+G y + K  atA G +  +   +
     sj05239     5    LFLGMILIGIDEEQGPQVYKCDPAGYYCGFK--ATAAGVK-QTESTS 48   

                   vLEkly.kkedmtleeaiel<-*
                   +LEk+ +kk d t e+ +e+   
     sj05239    49 FLEKKVkKKFDWTFEQTVEV    68   

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