# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osj05239.fasta.nr -Q sj05239.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sj05239, 80 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6841937 sequences Expectation_n fit: rho(ln(x))= 4.1995+/-0.000177; mu= 8.0659+/- 0.010 mean_var=51.0396+/- 9.857, 0's: 43 Z-trim: 50 B-trim: 33 in 1/66 Lambda= 0.179523 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088758|dbj|BAD92826.1| proteasome alpha 6 sub ( 80) 543 147.3 2.1e-34 gi|109083333|ref|XP_001085854.1| PREDICTED: simila ( 209) 478 130.8 5e-29 gi|114652655|ref|XP_001139565.1| PREDICTED: protea ( 209) 473 129.5 1.2e-28 gi|109083331|ref|XP_001085957.1| PREDICTED: simila ( 252) 440 121.0 5.2e-26 gi|73962758|ref|XP_862190.1| PREDICTED: similar to ( 246) 405 111.9 2.8e-23 gi|73962760|ref|XP_862212.1| PREDICTED: similar to ( 164) 401 110.7 4.2e-23 gi|194386432|dbj|BAG61026.1| unnamed protein produ ( 167) 401 110.7 4.2e-23 gi|296736|emb|CAA43964.1| macropain subunit iota [ ( 221) 401 110.8 5.2e-23 gi|119586280|gb|EAW65876.1| proteasome (prosome, m ( 227) 401 110.8 5.3e-23 gi|73962762|ref|XP_862236.1| PREDICTED: similar to ( 227) 401 110.8 5.3e-23 gi|123997751|gb|ABM86477.1| proteasome (prosome, m ( 246) 401 110.9 5.6e-23 gi|46397655|sp|P60901.1|PSA6_RAT Proteasome subuni ( 246) 401 110.9 5.6e-23 gi|73962756|ref|XP_537412.2| PREDICTED: similar to ( 246) 401 110.9 5.6e-23 gi|9910829|sp|Q9QUM9.1|PSA6_MOUSE Proteasome subun ( 246) 401 110.9 5.6e-23 gi|74179916|dbj|BAE36518.1| unnamed protein produc ( 246) 401 110.9 5.6e-23 gi|109084668|ref|XP_001095366.1| PREDICTED: simila ( 246) 401 110.9 5.6e-23 gi|148704781|gb|EDL36728.1| proteasome (prosome, m ( 251) 401 110.9 5.7e-23 gi|126283549|ref|XP_001363110.1| PREDICTED: simila ( 246) 400 110.6 6.8e-23 gi|149410335|ref|XP_001511492.1| PREDICTED: simila ( 246) 394 109.1 2e-22 gi|50748430|ref|XP_421242.1| PREDICTED: similar to ( 246) 391 108.3 3.4e-22 gi|47222687|emb|CAG00121.1| unnamed protein produc ( 246) 378 104.9 3.5e-21 gi|13811439|gb|AAK40122.1|AF354750_1 proteasome su ( 233) 370 102.8 1.4e-20 gi|33416349|gb|AAH55520.1| Psma6a protein [Danio r ( 246) 370 102.8 1.5e-20 gi|49902952|gb|AAH76196.1| Zgc:92716 [Danio rerio] ( 246) 369 102.6 1.8e-20 gi|50603942|gb|AAH77442.1| Psma6-prov protein [Xen ( 246) 366 101.8 3e-20 gi|38512262|gb|AAH61438.1| Proteasome (prosome, ma ( 246) 365 101.6 3.6e-20 gi|54261501|gb|AAH84423.1| LOC495277 protein [Xeno ( 246) 356 99.2 1.8e-19 gi|156227785|gb|EDO48587.1| predicted protein [Nem ( 246) 328 92.0 2.8e-17 gi|119629380|gb|EAX08975.1| hCG30646, isoform CRA_ ( 124) 292 82.4 1.1e-14 gi|47224863|emb|CAG06433.1| unnamed protein produc ( 246) 274 78.0 4.5e-13 gi|119629381|gb|EAX08976.1| hCG30646, isoform CRA_ ( 272) 270 77.0 1e-12 gi|116782184|gb|ABK22399.1| unknown [Picea sitchen ( 246) 261 74.6 4.6e-12 gi|167867923|gb|EDS31306.1| proteasome subunit alp ( 246) 256 73.3 1.1e-11 gi|108873937|gb|EAT38162.1| proteasome subunit alp ( 246) 253 72.5 2e-11 gi|156544544|ref|XP_001607854.1| PREDICTED: simila ( 246) 253 72.5 2e-11 gi|46101881|gb|EAK87114.1| hypothetical protein UM ( 305) 253 72.6 2.3e-11 gi|162671157|gb|EDQ57713.1| predicted protein [Phy ( 246) 252 72.3 2.3e-11 gi|162680407|gb|EDQ66843.1| predicted protein [Phy ( 246) 250 71.8 3.3e-11 gi|193613194|ref|XP_001948388.1| PREDICTED: simila ( 246) 249 71.5 4e-11 gi|91077062|ref|XP_968655.1| PREDICTED: similar to ( 246) 248 71.3 4.8e-11 gi|162665935|gb|EDQ52604.1| predicted protein [Phy ( 246) 247 71.0 5.7e-11 gi|190583982|gb|EDV24052.1| hypothetical protein T ( 249) 246 70.7 6.9e-11 gi|13811441|gb|AAK40123.1|AF354751_1 proteasome su ( 252) 246 70.7 7e-11 gi|121511944|gb|ABM55423.1| proteasome subunit alp ( 246) 244 70.2 9.8e-11 gi|49117797|gb|AAH72719.1| Proteasome (prosome, ma ( 252) 244 70.2 1e-10 gi|55236627|gb|EAA13600.2| AGAP003935-PA [Anophele ( 246) 242 69.7 1.4e-10 gi|158279069|gb|EDP04831.1| 20S proteasome alpha s ( 249) 242 69.7 1.4e-10 gi|83767691|dbj|BAE57830.1| unnamed protein produc ( 253) 242 69.7 1.4e-10 gi|119411493|gb|EAW21436.1| proteasome subunit alp ( 257) 242 69.7 1.5e-10 gi|66852126|gb|EAL92451.1| proteasome component Pr ( 258) 242 69.7 1.5e-10 >>gi|62088758|dbj|BAD92826.1| proteasome alpha 6 subunit (80 aa) initn: 543 init1: 543 opt: 543 Z-score: 773.0 bits: 147.3 E(): 2.1e-34 Smith-Waterman score: 543; 100.000% identity (100.000% similar) in 80 aa overlap (1-80:1-80) 10 20 30 40 50 60 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDW 10 20 30 40 50 60 70 80 sj0523 TFEQTVEVSQPKGADFFYGI :::::::::::::::::::: gi|620 TFEQTVEVSQPKGADFFYGI 70 80 >>gi|109083333|ref|XP_001085854.1| PREDICTED: similar to (209 aa) initn: 478 init1: 478 opt: 478 Z-score: 676.4 bits: 130.8 E(): 5e-29 Smith-Waterman score: 478; 100.000% identity (100.000% similar) in 70 aa overlap (9-78:138-207) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATA :::::::::::::::::::::::::::::: gi|109 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 110 120 130 140 150 160 40 50 60 70 80 sj0523 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::::::::::::: gi|109 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYVT 170 180 190 200 >>gi|114652655|ref|XP_001139565.1| PREDICTED: proteasome (209 aa) initn: 473 init1: 473 opt: 473 Z-score: 669.4 bits: 129.5 E(): 1.2e-28 Smith-Waterman score: 473; 97.222% identity (98.611% similar) in 72 aa overlap (9-80:138-209) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATA :::::::::::::::::::::::::::::: gi|114 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 110 120 130 140 150 160 40 50 60 70 80 sj0523 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI ::::::::::::::::::::::::::::::::::::::: .: gi|114 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFNAI 170 180 190 200 >>gi|109083331|ref|XP_001085957.1| PREDICTED: similar to (252 aa) initn: 440 init1: 440 opt: 440 Z-score: 622.1 bits: 121.0 E(): 5.2e-26 Smith-Waterman score: 440; 97.015% identity (100.000% similar) in 67 aa overlap (3-69:138-204) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYC :::::::::::::::::::::::::::::: gi|109 EIPVDMLCKRIADISQVYTQNAEMRPLGCWSFLFLGMILIGIDEEQGPQVYKCDPAGYYC 110 120 130 140 150 160 40 50 60 70 80 sj0523 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::::::::.. gi|109 GFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVT 170 180 190 200 210 220 gi|109 VENPKFRILTEAEIDAHLVALAERD 230 240 250 >>gi|73962758|ref|XP_862190.1| PREDICTED: similar to Pro (246 aa) initn: 401 init1: 401 opt: 405 Z-score: 573.2 bits: 111.9 E(): 2.8e-23 Smith-Waterman score: 405; 93.846% identity (96.923% similar) in 65 aa overlap (5-69:134-198) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGF : : :::::::::::::::::::::::::: gi|739 KYGYEIPVDMLCKRIADISQVYTQNAEMRPLELCMILIGIDEEQGPQVYKCDPAGYYCGF 110 120 130 140 150 160 40 50 60 70 80 sj0523 KATAAGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::::::.. gi|739 KATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVE 170 180 190 200 210 220 gi|739 NPKFRILSEAEIDAHLVALAERD 230 240 >>gi|73962760|ref|XP_862212.1| PREDICTED: similar to Pro (164 aa) initn: 401 init1: 401 opt: 401 Z-score: 570.0 bits: 110.7 E(): 4.2e-23 Smith-Waterman score: 401; 96.721% identity (100.000% similar) in 61 aa overlap (9-69:56-116) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATA :::::::::::::::::::::::::::::: gi|739 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 30 40 50 60 70 80 40 50 60 70 80 sj0523 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::.. gi|739 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKF 90 100 110 120 130 140 gi|739 RILSEAEIDAHLVALAERD 150 160 >>gi|194386432|dbj|BAG61026.1| unnamed protein product [ (167 aa) initn: 401 init1: 401 opt: 401 Z-score: 569.9 bits: 110.7 E(): 4.2e-23 Smith-Waterman score: 401; 96.721% identity (100.000% similar) in 61 aa overlap (9-69:59-119) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATA :::::::::::::::::::::::::::::: gi|194 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 30 40 50 60 70 80 40 50 60 70 80 sj0523 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::.. gi|194 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKF 90 100 110 120 130 140 gi|194 RILTEAEIDAHLVALAERD 150 160 >>gi|296736|emb|CAA43964.1| macropain subunit iota [Homo (221 aa) initn: 401 init1: 401 opt: 401 Z-score: 568.3 bits: 110.8 E(): 5.2e-23 Smith-Waterman score: 401; 96.721% identity (100.000% similar) in 61 aa overlap (9-69:113-173) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATA :::::::::::::::::::::::::::::: gi|296 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 90 100 110 120 130 140 40 50 60 70 80 sj0523 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::.. gi|296 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKF 150 160 170 180 190 200 gi|296 RILTEAEIDAHLVALAERD 210 220 >>gi|119586280|gb|EAW65876.1| proteasome (prosome, macro (227 aa) initn: 401 init1: 401 opt: 401 Z-score: 568.1 bits: 110.8 E(): 5.3e-23 Smith-Waterman score: 401; 96.721% identity (100.000% similar) in 61 aa overlap (9-69:119-179) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATA :::::::::::::::::::::::::::::: gi|119 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 90 100 110 120 130 140 40 50 60 70 80 sj0523 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::.. gi|119 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKF 150 160 170 180 190 200 gi|119 RILTEAEIDAHLVALAERD 210 220 >>gi|73962762|ref|XP_862236.1| PREDICTED: similar to Pro (227 aa) initn: 401 init1: 401 opt: 401 Z-score: 568.1 bits: 110.8 E(): 5.3e-23 Smith-Waterman score: 401; 96.721% identity (100.000% similar) in 61 aa overlap (9-69:119-179) 10 20 30 sj0523 LGSFLFLGMILIGIDEEQGPQVYKCDPAGYYCGFKATA :::::::::::::::::::::::::::::: gi|739 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATA 90 100 110 120 130 140 40 50 60 70 80 sj0523 AGVKQTESTSFLEKKVKKKFDWTFEQTVEVSQPKGADFFYGI :::::::::::::::::::::::::::::.. gi|739 AGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKF 150 160 170 180 190 200 gi|739 RILSEAEIDAHLVALAERD 210 220 80 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 20:33:34 2008 done: Wed Aug 13 20:36:46 2008 Total Scan time: 451.360 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]