hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-18433649/chunk_1/iprscan-20090618-18433649.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: sj05255 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00431.11.fs CUB domain 647.8 3.1e-196 3 PF00431.11.ls CUB domain 653.7 1.4e-193 3 PF01400.14.fs Astacin (Peptidase family M12A) 413.9 6.3e-124 1 PF01400.14.ls Astacin (Peptidase family M12A) 415.8 5.6e-122 1 PF07645.6.fs Calcium binding EGF domain 29.7 2.9e-08 1 PF00008.17.fs EGF-like domain 28.3 5.2e-07 1 PF07645.6.ls Calcium binding EGF domain 30.5 5.6e-06 1 PF00008.17.ls EGF-like domain 30.2 6.7e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01400.14.fs 1/1 201 394 .. 1 198 [] 413.9 6.3e-124 PF01400.14.ls 1/1 201 394 .. 1 198 [] 415.8 5.6e-122 PF00431.11.ls 1/3 395 504 .. 1 116 [] 204.3 2.5e-58 PF00431.11.fs 1/3 395 504 .. 1 116 [] 202.4 4.5e-61 PF00431.11.ls 2/3 508 617 .. 1 116 [] 232.6 7.9e-67 PF00431.11.fs 2/3 508 617 .. 1 116 [] 230.6 1.2e-69 PF07645.6.ls 1/1 621 660 .. 1 55 [] 30.5 5.6e-06 PF07645.6.fs 1/1 621 660 .. 1 55 [] 29.7 2.9e-08 PF00008.17.ls 1/1 624 660 .. 1 38 [] 30.2 6.7e-06 PF00008.17.fs 1/1 624 660 .. 1 38 [] 28.3 5.2e-07 PF00431.11.fs 3/3 664 773 .. 1 116 [] 214.8 7.6e-65 PF00431.11.ls 3/3 664 773 .. 1 116 [] 216.8 4.7e-62 Alignments of top-scoring domains: PF01400.14.fs: domain 1 of 1, from 201 to 394: score 413.9, E = 6.3e-124 *->rrWpngspIPYvidssltgraralirqAmrhweqkTCirFvprtsap r Wp+g +IP+vi +++tg +ra++rqAmrhwe++TC++F +rt++ sj05255 201 RVWPDG-VIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDE- 245 sggdnnylrffkgdGCySyVGraggGaQevSlGnGCdkfGiivHElgHAL d++++++++++GC+SyVGr+ggG+Q++S+G++CdkfGi+vHElgH++ sj05255 246 ---DSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVV 292 GFwHEQsRpDRDdyVsInwqNIqpgqegnFeKydpdevdslGvpYDYgSI GFwHE++RpDRD++VsI+++NIqpgqe+nF+K+ p+ev+slG++YD++SI sj05255 293 GFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSI 342 MHYgpyaFSknggkpTIvpkdne.gyqatIGQRdklSflDikkiNklYkC MHY++++FS+++ ++TIvpk +++g ++IGQR +lS++Di+++ klYkC sj05255 343 MHYARNTFSRGIFLDTIVPKYEVnGVKPPIGQRTRLSKGDIAQARKLYKC 392 se<-* + sj05255 393 PA 394 PF01400.14.ls: domain 1 of 1, from 201 to 394: score 415.8, E = 5.6e-122 *->rrWpngspIPYvidssltgraralirqAmrhweqkTCirFvprtsap r Wp+g +IP+vi +++tg +ra++rqAmrhwe++TC++F +rt++ sj05255 201 RVWPDG-VIPFVIGGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDE- 245 sggdnnylrffkgdGCySyVGraggGaQevSlGnGCdkfGiivHElgHAL d++++++++++GC+SyVGr+ggG+Q++S+G++CdkfGi+vHElgH++ sj05255 246 ---DSYIVFTYRPCGCCSYVGRRGGGPQAISIGKNCDKFGIVVHELGHVV 292 GFwHEQsRpDRDdyVsInwqNIqpgqegnFeKydpdevdslGvpYDYgSI GFwHE++RpDRD++VsI+++NIqpgqe+nF+K+ p+ev+slG++YD++SI sj05255 293 GFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSI 342 MHYgpyaFSknggkpTIvpkdne.gyqatIGQRdklSflDikkiNklYkC MHY++++FS+++ ++TIvpk +++g ++IGQR +lS++Di+++ klYkC sj05255 343 MHYARNTFSRGIFLDTIVPKYEVnGVKPPIGQRTRLSKGDIAQARKLYKC 392 se<-* + sj05255 393 PA 394 PF00431.11.ls: domain 1 of 3, from 395 to 504: score 204.3, E = 2.5e-58 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CG++ l +s+G+++SP+YPn Y+ +++CvW+I+++pg++ i L+F sj05255 395 CGET--LQDSTGNFSSPEYPN-GYSAHMHCVWRISVTPGEK-IILNF 437 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +++dl++++ C+YDyVE+rDG+++ +pl+GrfCG s++Pe+i+St++++ sj05255 438 TSLDLYRSRL-CWYDYVEVRDGFWRKAPLRGRFCG-SKLPEPIVSTDSRL 485 tikFvsDssiqkrGFkaty<-* +++F s+s+++++GF+a y sj05255 486 WVEFRSSSNWVGKGFFAVY 504 PF00431.11.fs: domain 1 of 3, from 395 to 504: score 202.4, E = 4.5e-61 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CG++ l +s+G+++SP+YPn Y+ +++CvW+I+++pg++ i L+F sj05255 395 CGET--LQDSTGNFSSPEYPN-GYSAHMHCVWRISVTPGEK-IILNF 437 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm +++dl++++ C+YDyVE+rDG+++ +pl+GrfCG s++Pe+i+St++++ sj05255 438 TSLDLYRSRL-CWYDYVEVRDGFWRKAPLRGRFCG-SKLPEPIVSTDSRL 485 tikFvsDssiqkrGFkaty<-* +++F s+s+++++GF+a y sj05255 486 WVEFRSSSNWVGKGFFAVY 504 PF00431.11.ls: domain 2 of 3, from 508 to 617: score 232.6, E = 7.9e-67 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ +++ +G+I+SPnYP+ +Y+p+k C+W+I++ +g++ + LtF sj05255 508 CGGD--VKKDYGHIQSPNYPD-DYRPSKVCIWRIQVSEGFH-VGLTF 550 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm q+F++E+hd+ C+YDy+E+rDG+++ss+l+Gr+CG +++P+di+Sts+++ sj05255 551 QSFEIERHDS-CAYDYLEVRDGHSESSTLIGRYCG-YEKPDDIKSTSSRL 598 tikFvsDssiqkrGFkaty<-* ++kFvsD+si+k+GF+ ++ sj05255 599 WLKFVSDGSINKAGFAVNF 617 PF00431.11.fs: domain 2 of 3, from 508 to 617: score 230.6, E = 1.2e-69 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg+ +++ +G+I+SPnYP+ +Y+p+k C+W+I++ +g++ + LtF sj05255 508 CGGD--VKKDYGHIQSPNYPD-DYRPSKVCIWRIQVSEGFH-VGLTF 550 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm q+F++E+hd+ C+YDy+E+rDG+++ss+l+Gr+CG +++P+di+Sts+++ sj05255 551 QSFEIERHDS-CAYDYLEVRDGHSESSTLIGRYCG-YEKPDDIKSTSSRL 598 tikFvsDssiqkrGFkaty<-* ++kFvsD+si+k+GF+ ++ sj05255 599 WLKFVSDGSINKAGFAVNF 617 PF07645.6.ls: domain 1 of 1, from 621 to 660: score 30.5, E = 5.6e-06 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse vDEC + C C+Nt GS++C+ C++GYe sj05255 621 -VDECSRPNRGGC-----EQRCLNTLGSYKCS----CDPGYE----- 652 nnedgtnC<-* +d C sj05255 653 LAPDKRRC 660 PF07645.6.fs: domain 1 of 1, from 621 to 660: score 29.7, E = 2.9e-08 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse vDEC + C C+Nt GS++C+ C++GYe sj05255 621 -VDECSRPNRGGC-----EQRCLNTLGSYKCS----CDPGYE----- 652 nnedgtnC<-* +d C sj05255 653 LAPDKRRC 660 PF00008.17.ls: domain 1 of 1, from 624 to 660: score 30.2, E = 6.7e-06 *->Cspnn.gpCsngGtCvdtpggytCeCppGyfllytGkrC<-* Cs n+g+C +C++t g+y+C C+pGy l+ + +rC sj05255 624 CSRPNrGGCEQ--RCLNTLGSYKCSCDPGYELAPDKRRC 660 PF00008.17.fs: domain 1 of 1, from 624 to 660: score 28.3, E = 5.2e-07 *->Cspnn.gpCsngGtCvdtpggytCeCppGyfllytGkrC<-* Cs n+g+C +C++t g+y+C C+pGy l+ + +rC sj05255 624 CSRPNrGGCEQ--RCLNTLGSYKCSCDPGYELAPDKRRC 660 PF00431.11.fs: domain 3 of 3, from 664 to 773: score 214.8, E = 7.6e-65 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg lt+ +GsItSP++P+ +Yppnk+C+W+++ap +yr isL+F sj05255 664 CGGF--LTKLNGSITSPGWPK-EYPPNKNCIWQLVAPTQYR-ISLQF 706 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm + F++E++d C+YD+VE+r+Gl ++s+l+G+fCG s++Pe+i+S++n m sj05255 707 DFFETEGNDV-CKYDFVEVRSGLTADSKLHGKFCG-SEKPEVITSQYNNM 754 tikFvsDssiqkrGFkaty<-* +++F+sD++++k+GFka++ sj05255 755 RVEFKSDNTVSKKGFKAHF 773 PF00431.11.ls: domain 3 of 3, from 664 to 773: score 216.8, E = 4.7e-62 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CGg lt+ +GsItSP++P+ +Yppnk+C+W+++ap +yr isL+F sj05255 664 CGGF--LTKLNGSITSPGWPK-EYPPNKNCIWQLVAPTQYR-ISLQF 706 qdFdlEdhdgaCgYDyVEirDGlpssspllGrfCGgsgiPedirStsnqm + F++E++d C+YD+VE+r+Gl ++s+l+G+fCG s++Pe+i+S++n m sj05255 707 DFFETEGNDV-CKYDFVEVRSGLTADSKLHGKFCG-SEKPEVITSQYNNM 754 tikFvsDssiqkrGFkaty<-* +++F+sD++++k+GFka++ sj05255 755 RVEFKSDNTVSKKGFKAHF 773 //