hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18433649/chunk_1/iprscan-20090618-18433649.nocrc
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Query sequence: sj05255
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00042                                                 523.2   1.1e-152   3
SM00235                                                 196.2    2.9e-54   1
SM00179                                                  52.2    6.8e-11   1
SM00181                                                  35.0    9.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00235    1/1     199   341 ..     1   204 []   196.2  2.9e-54
SM00042    1/3     395   507 ..     1   144 []   158.7  6.1e-43
SM00042    2/3     508   620 ..     1   144 []   181.4  8.8e-50
SM00179    1/1     620   661 ..     1    34 []    52.2  6.8e-11
SM00181    1/1     623   661 ..     1    32 []    35.0  9.9e-06
SM00042    3/3     664   776 ..     1   144 []   183.2  2.5e-50

Alignments of top-scoring domains:
SM00235: domain 1 of 1, from 199 to 341: score 196.2, E = 2.9e-54
                   *->gskrWpk.tvpYridryfrpsnytsslspeevkltstvreaiarAfq
                      +++ Wp +++p++i          +++++        +r+++++A++
     sj05255   199    PERVWPDgVIPFVI---------GGNFTGS-------QRAVFRQAMR 229  

                   eWsdvTclrFvevtsegtadiyIsFgsgdhvrigdsGcfDgpgGetlsha
                   +W+++Tc++F e+t    +d yI+F+ +       +Gc+        s++
     sj05255   230 HWEKHTCVTFLERT---DEDSYIVFTYRP------CGCC--------SYV 262  

                   grpgryyfpgigGdqhfslqkSdenwClgfgpgtnlfgvaaHElGHALGl
                   gr g       gG q +s+    + +C++fg       +++HElGH++G+
     sj05255   263 GRRG-------GGPQAISI----GKNCDKFG-------IVVHELGHVVGF 294  

                   yHeqsRsDGGdkRDnymyinyqnidpgsasernFdlssykidqddslgga
                   +He++R+D    RD++++i+ +ni+pg  +e+nF ++     ++ slg  
     sj05255   295 WHEHTRPD----RDRHVSIVRENIQPG--QEYNFLKMEPQ--EVESLG-- 334  

                   dipydYGs<-*
                      yd+ s   
     sj05255   335 -ETYDFDS    341  

SM00042: domain 1 of 3, from 395 to 507: score 158.7, E = 6.1e-43
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CG tl +s+      G ++SP+YPn+     Y  +++CvW+Is++pG
     sj05255   395    CGETLQDST------GNFSSPEYPNG-----YSAHMHCVWRISVTPG 430  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                    +i+L+Ft+   +dl  s+          C+yDyve++DG +  ++pl G
     sj05255   431 EKIILNFTS---LDLYRSRL---------CWYDYVEVRDGFW-RKAPLRG 467  

                   ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
                       rfCGs+ p+ i S+ ++++v+F+s s+       ++GF a Y+a+ 
     sj05255   468 ----RFCGSKlPePIVSTDSRLWVEFRSSSNWV-----GKGFFAVYEAI  507  

                   -*
                     
     sj05255     -    -    

SM00042: domain 2 of 3, from 508 to 620: score 181.4, E = 8.8e-50
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg+++ +       G+i+SPnYP++     Y +++ C+W+I++ +G
     sj05255   508    CGGDVKKDY------GHIQSPNYPDD-----YRPSKVCIWRIQVSEG 543  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   +++ L+F++   F++E +d+         C+yDy+e++DG+s +ss+l+G
     sj05255   544 FHVGLTFQS---FEIERHDS---------CAYDYLEVRDGHS-ESSTLIG 580  

                   ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
                       r+CG+e+p+ i S+s++++++FvsD+s++     k GF ++++ + 
     sj05255   581 ----RYCGYEkPdDIKSTSSRLWLKFVSDGSIN-----KAGFAVNFFKE  620  

                   -*
                     
     sj05255     -    -    

SM00179: domain 1 of 1, from 620 to 661: score 52.2, E = 6.8e-11
                   *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe
                       +DEC++++++ C +     +C N+ GSY+C+C+pGy+  +++r+Ce
     sj05255   620    EVDECsrpnrgGCEQ-----RCLNtLGSYKCsCDPGYElapdkRRCE 661  

                   <-*
                      
     sj05255     -     -    

SM00181: domain 1 of 1, from 623 to 661: score 35.0, E = 9.9e-06
                   *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe
                      eC+++++++C++       +C+++ +sy+C+C  pGy++ ++++rCe
     sj05255   623    ECSrpnrgGCEQ-------RCLntlgSYKCsCD-PGYELapdkrRCE 661  

                   <-*
                      
     sj05255     -     -    

SM00042: domain 3 of 3, from 664 to 776: score 183.2, E = 2.5e-50
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CGg lt  +      G+itSP++P+      Yp+n++C+W+++ap  
     sj05255   664    CGGFLTKLN------GSITSPGWPKE-----YPPNKNCIWQLVAPTQ 699  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                   yri+L+F+    F++E++d          C yD+ve++ G + ++s+l+G
     sj05255   700 YRISLQFDF---FETEGNDV---------CKYDFVEVRSGLT-ADSKLHG 736  

                   ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav<
                       +fCGse+p++i+S++N+m+v+F+sD++v+     k+GF+a+++++ 
     sj05255   737 ----KFCGSEkPeVITSQYNNMRVEFKSDNTVS-----KKGFKAHFFSE  776  

                   -*
                     
     sj05255     -    -    

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