# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Osj05705.fasta.nr -Q sj05705.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 sj05705, 456 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6838682 sequences Expectation_n fit: rho(ln(x))= 6.2304+/-0.000197; mu= 7.4602+/- 0.011 mean_var=114.0375+/-21.748, 0's: 31 Z-trim: 40 B-trim: 208 in 1/64 Lambda= 0.120102 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62088768|dbj|BAD92831.1| TBP-associated factor ( 456) 3175 560.7 2.3e-157 gi|21536369|ref|NP_005670.2| TBP-associated factor ( 869) 2847 504.1 4.7e-140 gi|73621973|sp|Q15572|TAF1C_HUMAN TATA box-binding ( 869) 2847 504.1 4.7e-140 gi|119615901|gb|EAW95495.1| TATA box binding prote ( 844) 2845 503.8 5.9e-140 gi|119615905|gb|EAW95499.1| TATA box binding prote ( 869) 2845 503.8 6e-140 gi|119615902|gb|EAW95496.1| TATA box binding prote ( 870) 2845 503.8 6e-140 gi|21536367|ref|NP_647610.1| TBP-associated factor ( 775) 2827 500.6 4.8e-139 gi|20381362|gb|AAH28131.1| TATA box binding protei ( 775) 2825 500.3 6.1e-139 gi|114663934|ref|XP_511139.2| PREDICTED: TBP-assoc ( 896) 2799 495.8 1.5e-137 gi|119615903|gb|EAW95497.1| TATA box binding prote ( 392) 2719 481.7 1.2e-133 gi|193788516|dbj|BAG53410.1| unnamed protein produ ( 392) 2707 479.6 5.2e-133 gi|73621975|sp|Q6P773|TAF1C_RAT TATA box-binding p ( 842) 1619 291.3 5.2e-76 gi|148679657|gb|EDL11604.1| TATA box binding prote ( 684) 1521 274.3 5.8e-71 gi|26352572|dbj|BAC39916.1| unnamed protein produc ( 836) 1521 274.4 6.7e-71 gi|74140236|dbj|BAE33818.1| unnamed protein produc ( 836) 1521 274.4 6.7e-71 gi|73621974|sp|Q6PDZ2|TAF1C_MOUSE TATA box-binding ( 836) 1521 274.4 6.7e-71 gi|1842208|emb|CAA71093.1| TAFI95 [Mus musculus] ( 836) 1513 273.0 1.7e-70 gi|194208847|ref|XP_001502261.2| PREDICTED: simila ( 850) 776 145.3 4.9e-32 gi|73957195|ref|XP_852007.1| PREDICTED: similar to ( 811) 766 143.5 1.6e-31 gi|90080622|dbj|BAE89792.1| unnamed protein produc ( 263) 729 136.7 5.8e-30 gi|117306213|gb|AAI26513.1| TATA box binding prote ( 893) 736 138.4 6.2e-30 gi|119909822|ref|XP_001250301.1| PREDICTED: hypoth ( 893) 734 138.0 7.9e-30 gi|126304914|ref|XP_001374791.1| PREDICTED: hypoth ( 854) 662 125.5 4.3e-26 gi|148679658|gb|EDL11605.1| TATA box binding prote ( 412) 563 108.1 3.7e-21 gi|146332599|gb|ABQ22805.1| TATA-box binding prote ( 76) 391 77.7 9.7e-13 gi|149038313|gb|EDL92673.1| rCG51282 [Rattus norve ( 186) 381 76.3 6.3e-12 gi|189538281|ref|XP_001344118.2| PREDICTED: simila ( 981) 284 60.1 2.5e-06 >>gi|62088768|dbj|BAD92831.1| TBP-associated factor 1C i (456 aa) initn: 3175 init1: 3175 opt: 3175 Z-score: 2980.5 bits: 560.7 E(): 2.3e-157 Smith-Waterman score: 3175; 100.000% identity (100.000% similar) in 456 aa overlap (1-456:1-456) 10 20 30 40 50 60 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQLPSSATSPFLLGPQFSLYLVDERLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQLPSSATSPFLLGPQFSLYLVDERLP 10 20 30 40 50 60 70 80 90 100 110 120 sj0570 LVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLLGGQGGQLQLLHLAGEGASVPRLAGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLLGGQGGQLQLLHLAGEGASVPRLAGPP 70 80 90 100 110 120 130 140 150 160 170 180 sj0570 QSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIGLAAVVPPLPSAPTPGLVLFQLSAAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIGLAAVVPPLPSAPTPGLVLFQLSAAGD 130 140 150 160 170 180 190 200 210 220 230 240 sj0570 VFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTASWTSQDTAGCSQWLKALLKVPLAPPVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTASWTSQDTAGCSQWLKALLKVPLAPPVW 190 200 210 220 230 240 250 260 270 280 290 300 sj0570 TAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMARGQLLLQRDLGSLPAAEPPPAPESGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMARGQLLLQRDLGSLPAAEPPPAPESGL 250 260 270 280 290 300 310 320 330 340 350 360 sj0570 EDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQTRRPKRRTQLSSSFSLSGHVDPSEDTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 EDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQTRRPKRRTQLSSSFSLSGHVDPSEDTS 310 320 330 340 350 360 370 380 390 400 410 420 sj0570 SPHSPEWPPADALPLPPTTPPSQELTPDACAQGVPSEQRQMLRDYMAKLPPQRDTPGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SPHSPEWPPADALPLPPTTPPSQELTPDACAQGVPSEQRQMLRDYMAKLPPQRDTPGCAT 370 380 390 400 410 420 430 440 450 sj0570 TPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRMGF :::::::::::::::::::::::::::::::::::: gi|620 TPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRMGF 430 440 450 >>gi|21536369|ref|NP_005670.2| TBP-associated factor 1C (869 aa) initn: 2842 init1: 2842 opt: 2847 Z-score: 2669.6 bits: 504.1 E(): 4.7e-140 Smith-Waterman score: 2847; 92.699% identity (94.912% similar) in 452 aa overlap (6-456:424-869) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|215 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 400 410 420 430 440 450 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|215 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 460 470 480 490 500 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 510 520 530 540 550 560 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS 570 580 590 600 610 620 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA 630 640 650 660 670 680 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 690 700 710 720 730 740 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV 750 760 770 780 790 800 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 810 820 830 840 850 860 sj0570 GF :: gi|215 GF >>gi|73621973|sp|Q15572|TAF1C_HUMAN TATA box-binding pro (869 aa) initn: 2842 init1: 2842 opt: 2847 Z-score: 2669.6 bits: 504.1 E(): 4.7e-140 Smith-Waterman score: 2847; 92.699% identity (94.912% similar) in 452 aa overlap (6-456:424-869) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|736 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 400 410 420 430 440 450 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|736 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 460 470 480 490 500 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 510 520 530 540 550 560 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS 570 580 590 600 610 620 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA 630 640 650 660 670 680 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 690 700 710 720 730 740 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV 750 760 770 780 790 800 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|736 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 810 820 830 840 850 860 sj0570 GF :: gi|736 GF >>gi|119615901|gb|EAW95495.1| TATA box binding protein ( (844 aa) initn: 2840 init1: 2840 opt: 2845 Z-score: 2667.8 bits: 503.8 E(): 5.9e-140 Smith-Waterman score: 2845; 92.478% identity (94.912% similar) in 452 aa overlap (6-456:399-844) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|119 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 370 380 390 400 410 420 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|119 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 430 440 450 460 470 480 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 490 500 510 520 530 540 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LAAVVPPMPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS 550 560 570 580 590 600 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA 610 620 630 640 650 660 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 670 680 690 700 710 720 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV 730 740 750 760 770 780 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 790 800 810 820 830 840 sj0570 GF :: gi|119 GF >>gi|119615905|gb|EAW95499.1| TATA box binding protein ( (869 aa) initn: 2840 init1: 2840 opt: 2845 Z-score: 2667.7 bits: 503.8 E(): 6e-140 Smith-Waterman score: 2845; 92.478% identity (94.912% similar) in 452 aa overlap (6-456:424-869) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|119 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 400 410 420 430 440 450 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|119 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 460 470 480 490 500 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 510 520 530 540 550 560 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LAAVVPPMPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS 570 580 590 600 610 620 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA 630 640 650 660 670 680 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 690 700 710 720 730 740 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV 750 760 770 780 790 800 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 810 820 830 840 850 860 sj0570 GF :: gi|119 GF >>gi|119615902|gb|EAW95496.1| TATA box binding protein ( (870 aa) initn: 2840 init1: 2840 opt: 2845 Z-score: 2667.7 bits: 503.8 E(): 6e-140 Smith-Waterman score: 2845; 92.478% identity (94.912% similar) in 452 aa overlap (6-456:425-870) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|119 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 400 410 420 430 440 450 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|119 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 460 470 480 490 500 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 510 520 530 540 550 560 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LAAVVPPMPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS 570 580 590 600 610 620 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA 630 640 650 660 670 680 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 690 700 710 720 730 740 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV 750 760 770 780 790 800 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 810 820 830 840 850 860 sj0570 GF :: gi|119 GF 870 >>gi|21536367|ref|NP_647610.1| TBP-associated factor 1C (775 aa) initn: 2432 init1: 2432 opt: 2827 Z-score: 2651.5 bits: 500.6 E(): 4.8e-139 Smith-Waterman score: 2827; 92.478% identity (94.690% similar) in 452 aa overlap (6-456:331-775) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|215 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 310 320 330 340 350 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|215 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 360 370 380 390 400 410 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|215 GGQGGQLQLLHLA-EGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 420 430 440 450 460 470 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS 480 490 500 510 520 530 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA 540 550 560 570 580 590 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 600 610 620 630 640 650 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV 660 670 680 690 700 710 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 720 730 740 750 760 770 sj0570 GF :: gi|215 GF >>gi|20381362|gb|AAH28131.1| TATA box binding protein (T (775 aa) initn: 2430 init1: 2430 opt: 2825 Z-score: 2649.6 bits: 500.3 E(): 6.1e-139 Smith-Waterman score: 2825; 92.257% identity (94.690% similar) in 452 aa overlap (6-456:331-775) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|203 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 310 320 330 340 350 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|203 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 360 370 380 390 400 410 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|203 GGQGGQLQLLHLA-EGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 420 430 440 450 460 470 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|203 LAAVVPPMPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS 480 490 500 510 520 530 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|203 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA 540 550 560 570 580 590 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|203 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 600 610 620 630 640 650 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|203 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV 660 670 680 690 700 710 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|203 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 720 730 740 750 760 770 sj0570 GF :: gi|203 GF >>gi|114663934|ref|XP_511139.2| PREDICTED: TBP-associate (896 aa) initn: 2794 init1: 2794 opt: 2799 Z-score: 2624.4 bits: 495.8 E(): 1.5e-137 Smith-Waterman score: 2799; 91.150% identity (94.027% similar) in 452 aa overlap (6-456:451-896) 10 20 30 sj0570 SLRGTWRLMGDAAAPQGSALTWRATWGLEGHYTAQ .:: ..:. .: . : : :: . . gi|114 TAHPRVLTVGDRTGVKMLDTQGPPGCGLLLFRLGAEASCQKGERVLL--TQYL-GHSSPK 430 440 450 460 470 40 50 60 70 80 90 sj0570 -LPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL :: . :. :::::::::::::::::::::::::::::::::::::::::::::: gi|114 CLPPTL---HLVCTQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLLL 480 490 500 510 520 530 100 110 120 130 140 150 sj0570 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTIG 540 550 560 570 580 590 160 170 180 190 200 210 sj0570 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTAS ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|114 LAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTHPDCHAPTAS 600 610 620 630 640 650 220 230 240 250 260 270 sj0570 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAMA ::::::::::::::::::::::::::::::: :.:::::::::::::::::::::::::: gi|114 WTSQDTAGCSQWLKALLKVPLAPPVWTAPTFPHHQMLGSTELRREEEEGQRLGVLRKAMA 660 670 680 690 700 710 280 290 300 310 320 330 sj0570 RGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RGRLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQT 720 730 740 750 760 770 340 350 360 370 380 390 sj0570 RRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQGV :::::::::::::::::::::::::: :::::::::::::::: :::::::::::::::: gi|114 RRPKRRTQLSSSFSLSGHVDPSEDTSPPHSPEWPPADALPLPPMTPPSQELTPDACAQGV 780 790 800 810 820 830 400 410 420 430 440 450 sj0570 PSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|114 PSEQRQMLRDYMAKLPPQRDTPGCATTAPHSQASSVRATRSQQHTPVLSSSQPLRKKPRM 840 850 860 870 880 890 sj0570 GF :: gi|114 GF >>gi|119615903|gb|EAW95497.1| TATA box binding protein ( (392 aa) initn: 2430 init1: 2430 opt: 2719 Z-score: 2554.3 bits: 481.7 E(): 1.2e-133 Smith-Waterman score: 2719; 99.491% identity (99.746% similar) in 393 aa overlap (64-456:1-392) 40 50 60 70 80 90 sj0570 AQLPSSATSPFLLGPQFSLYLVDERLPLVPMLKWNHGLPSPLLLARLLPPPRPSCVQPLL :::::::::::::::::::::::::::::: gi|119 MLKWNHGLPSPLLLARLLPPPRPSCVQPLL 10 20 30 100 110 120 130 140 150 sj0570 LGGQGGQLQLLHLAGEGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTI :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: gi|119 LGGQGGQLQLLHLA-EGASVPRLAGPPQSLPSRIDSLPAFPLLEPKIQWRLQERLKAPTI 40 50 60 70 80 160 170 180 190 200 210 sj0570 GLAAVVPPLPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTA ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GLAAVVPPMPSAPTPGLVLFQLSAAGDVFYQQLRPQVDSSLRRDAGPPGDTQPDCHAPTA 90 100 110 120 130 140 220 230 240 250 260 270 sj0570 SWTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SWTSQDTAGCSQWLKALLKVPLAPPVWTAPTFTHRQMLGSTELRREEEEGQRLGVLRKAM 150 160 170 180 190 200 280 290 300 310 320 330 sj0570 ARGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARGQLLLQRDLGSLPAAEPPPAPESGLEDKLSERLGEAWAGRGAAWWERQQGRTSEPGRQ 210 220 230 240 250 260 340 350 360 370 380 390 sj0570 TRRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRRPKRRTQLSSSFSLSGHVDPSEDTSSPHSPEWPPADALPLPPTTPPSQELTPDACAQG 270 280 290 300 310 320 400 410 420 430 440 450 sj0570 VPSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VPSEQRQMLRDYMAKLPPQRDTPGCATTPPHSQASSVRATRSQQHTPVLSSSQPLRKKPR 330 340 350 360 370 380 sj0570 MGF ::: gi|119 MGF 390 456 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Wed Aug 13 20:46:13 2008 done: Wed Aug 13 20:48:35 2008 Total Scan time: 867.760 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]