hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/Pfam.bin
Sequence file: /db/iprscan/tmp/20080813/iprscan-20080813-21011874/chunk_1/iprscan-20080813-21011874.nocrc
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Query sequence: sj06224
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00270.19.ls DEAD/DEAH box helicase 251.4 1.8e-72 1
PF00270.19.fs DEAD/DEAH box helicase 249.5 6.3e-72 1
PF00271.21.fs Helicase conserved C-terminal domain 120.5 1.4e-34 1
PF00271.21.ls Helicase conserved C-terminal domain 122.5 1.1e-33 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00270.19.fs 1/1 197 368 .. 1 213 [] 249.5 6.3e-72
PF00270.19.ls 1/1 197 368 .. 1 213 [] 251.4 1.8e-72
PF00271.21.fs 1/1 439 515 .. 1 76 [] 120.5 1.4e-34
PF00271.21.ls 1/1 439 515 .. 1 76 [] 122.5 1.1e-33
Alignments of top-scoring domains:
PF00270.19.fs: domain 1 of 1, from 197 to 368: score 249.5, E = 6.3e-72
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
*->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
tpiQ + +p++l+GrD++++A+TGSGKTla+llP++ +++++p
sj06224 197 TPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHqP---- 239
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
++++dgp +lvlaPTreLa+Q+ +++ +gk ++ lk
sj06224 240 ----YLERGDGPICLVLAPTRELAQQVQQVADDYGK--------CSRLKS 277
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
++yGG ++++q+++l + +g + I ++TPgrL+d+l ++ g
sj06224 278 TCIYGGAPKGPQIRDL--E--RG----VEICIATPGRLIDFL----ES-G 314
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
+ +l+++ +lVlDEA+r+ldm Gf++++++i+ +++ p+
sj06224 315 K-TNLRRCTYLVLDEADRMLDM-GFEPQIRKIVDQIR-PD---------- 351
RF xxxxxxxxxxxxxxxxx
rqtllfSATlprnvedl<-*
rqtl+ SAT+p++v+ l
sj06224 352 RQTLMWSATWPKEVRQL 368
PF00270.19.ls: domain 1 of 1, from 197 to 368: score 251.4, E = 1.8e-72
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxx
*->tpiQaeaipaileGrDvlvqApTGSGKTlafllPilqallk.pennq
tpiQ + +p++l+GrD++++A+TGSGKTla+llP++ +++++p
sj06224 197 TPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHqP---- 239
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
eskplkkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleellglkv
++++dgp +lvlaPTreLa+Q+ +++ +gk ++ lk
sj06224 240 ----YLERGDGPICLVLAPTRELAQQVQQVADDYGK--------CSRLKS 277
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
allyGGdsikeqleklDYrlkkglkgkpdIlvgTPgrLldlllkgrkreg
++yGG ++++q+++l + +g + I ++TPgrL+d+l ++ g
sj06224 278 TCIYGGAPKGPQIRDL--E--RG----VEICIATPGRLIDFL----ES-G 314
RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
asldlknlkllVlDEAhrlldmkGfgedleeilrrlprpklrrlsqdlpn
+ +l+++ +lVlDEA+r+ldm Gf++++++i+ +++ p+
sj06224 315 K-TNLRRCTYLVLDEADRMLDM-GFEPQIRKIVDQIR-PD---------- 351
RF xxxxxxxxxxxxxxxxx
rqtllfSATlprnvedl<-*
rqtl+ SAT+p++v+ l
sj06224 352 RQTLMWSATWPKEVRQL 368
PF00271.21.fs: domain 1 of 1, from 439 to 515: score 120.5, E = 1.4e-34
*->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
++++ g+++ ++hG++sq eR+++l++Fr+gk ++L+aTdva+rG+D
sj06224 439 RMrRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLD 485
ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
+ dv +VInyd+p + e+y++RiGR++R
sj06224 486 VEDVKFVINYDYPNSSEDYVHRIGRTARST 515
PF00271.21.ls: domain 1 of 1, from 439 to 515: score 122.5, E = 1.1e-33
*->ll.epgikvarlhGglsqeeReeilekFrngkskvLvaTdvagrGiD
++++ g+++ ++hG++sq eR+++l++Fr+gk ++L+aTdva+rG+D
sj06224 439 RMrRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLD 485
ipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
+ dv +VInyd+p + e+y++RiGR++R
sj06224 486 VEDVKFVINYDYPNSSEDYVHRIGRTARST 515
//