hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18504217/chunk_1/iprscan-20090618-18504217.nocrc
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Query sequence: sj06327
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03031.8.ls NLI interacting factor-like phosphatase        330.0    3.9e-96   1
PF03031.8.fs NLI interacting factor-like phosphatase        328.0    1.5e-95   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03031.8.fs   1/1      93   267 ..     1   190 []   328.0  1.5e-95
PF03031.8.ls   1/1      93   267 ..     1   190 []   330.0  3.9e-96

Alignments of top-scoring domains:
PF03031.8.fs: domain 1 of 1, from 93 to 267: score 328.0, E = 1.5e-95
                   *->psrlstvqkKtLvlDLDETLIHSwhhdgvtrpstkpmsnkDfivhve
                      + + +++++ ++v+DLDETL+HS         s+kp++n+Dfiv++e
     sj06327    93    EVTEEDQGRICVVIDLDETLVHS---------SFKPINNADFIVPIE 130  

                   idGghphlvyVhKRPhvDeFLervSqwYELvvFTASlekYAdpvaDfLDp
                   i+ g+ h+vyV KRP+vDeFL+r+++++E+v+FTASl+kYAdpv D+LD+
     sj06327   131 IE-GTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDR 179  

                   grkifshRlysRqhCinekGkyiKdlsllgrdLSrViIIDNSPasYrfhP
                     ++f+ Rl+ R++C+++ G y+Kdls+lgrdL +++I+DNSPasY+fhP
     sj06327   180 -CGVFRARLF-RESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHP 227  

                   NeNAIpiksWfsDpgDteLLnLlPfLealrftdikDVrsvLkr<-*
                    eNA+p++sWf+D+ DteLLnL+P +e+l+    +DV+++L+    
     sj06327   228 -ENAVPVQSWFDDMADTELLNLIPIFEELSGA--EDVYTSLGQ    267  

PF03031.8.ls: domain 1 of 1, from 93 to 267: score 330.0, E = 3.9e-96
                   *->psrlstvqkKtLvlDLDETLIHSwhhdgvtrpstkpmsnkDfivhve
                      + + +++++ ++v+DLDETL+HS         s+kp++n+Dfiv++e
     sj06327    93    EVTEEDQGRICVVIDLDETLVHS---------SFKPINNADFIVPIE 130  

                   idGghphlvyVhKRPhvDeFLervSqwYELvvFTASlekYAdpvaDfLDp
                   i+ g+ h+vyV KRP+vDeFL+r+++++E+v+FTASl+kYAdpv D+LD+
     sj06327   131 IE-GTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLDR 179  

                   grkifshRlysRqhCinekGkyiKdlsllgrdLSrViIIDNSPasYrfhP
                     ++f+ Rl+ R++C+++ G y+Kdls+lgrdL +++I+DNSPasY+fhP
     sj06327   180 -CGVFRARLF-RESCVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHP 227  

                   NeNAIpiksWfsDpgDteLLnLlPfLealrftdikDVrsvLkr<-*
                    eNA+p++sWf+D+ DteLLnL+P +e+l+    +DV+++L+    
     sj06327   228 -ENAVPVQSWFDDMADTELLNLIPIFEELSGA--EDVYTSLGQ    267  

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