hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-18504217/chunk_1/iprscan-20090618-18504217.nocrc
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Query sequence: sj06327
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00577                                                 261.1    8.6e-74   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00577    1/1     100   243 ..     1   173 []   261.1  8.6e-74

Alignments of top-scoring domains:
SM00577: domain 1 of 1, from 100 to 243: score 261.1, E = 8.6e-74
                   *->kkltLVLDLDeTLvHsivvstlseaekylssekestrrdflvpqlkr
                      ++ ++V+DLDeTLvHs              s+k+ +++df+vp    
     sj06327   100    GRICVVIDLDETLVHS--------------SFKPINNADFIVP---- 128  

                   gpmldiveidghihgvlvkkRPgvdeFLkkvsklFelvvfTaglrvYAdp
                         +ei+g++h+v+v+kRP+vdeFL ++++lFe+v+fTa+l +YAdp
     sj06327   129 ------IEIEGTTHQVYVLKRPYVDEFLRRMGELFECVLFTASLAKYADP 172  

                   vldlLDPkrkyfgdrrLyRdecvlvkgktyvKDlLslvlrpdlsrVvIiD
                   v dlLD    +++++rL+R++cv+++g  yvKD Ls+++r dl++++I+D
     sj06327   173 VTDLLD-RC-GVFRARLFRESCVFHQGC-YVKD-LSRLGR-DLRKTLILD 217  

                   dspdswplhPeNlipIkpyfsdpddt<-*
                   +sp+s+ +hPeN++p+ ++f+d+ dt   
     sj06327   218 NSPASYIFHPENAVPVQSWFDDMADT    243  

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